Gene Information

Name : LAB52_10188 (LAB52_10188)
Accession : YP_005854908.1
Strain :
Genome accession: NC_017472
Putative virulence/resistance : Resistance
Product : cation transport ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 64118 - 66271 bp
Length : 2154 bp
Strand : +
Note : COG2217 Cation transport ATPase

DNA sequence :
ATGGAAAATAAAGAGGAACATATGAACATGAAAAGTATGAGTGCTAAGAATATGGAAAATAATGAATCAAATATGAGTCA
TATGGATCACGATATGACCGAAACGGATCACAGCCAAATGAACATGAATCACGGTGATATGGATATGGCTGGGACCGACA
TGATGATGCACGGTGGCTCAATGATGCATATGGGGAATTTGAAAGTTAAATTTTGGGTCTCCGTTGTCTTAGCGATTCCA
GTTTTACTGTTAGCACCAATCATGGGTTTAAACGTTTCCATCCTTAGTTTCAGTTCACCGCTAATTGTTGGCATTATCAT
CGTTTTGTTTGATACGGCACTTTACTTTTATGGCGGAATGCCCTTTTTAAAGGGGGCTAAAGCGGAAATTCAGAATAAAT
CTCCTGAAATGATGACGCTAGTAACCCTTGGCATTTCCGTTTCGTATTTCTACAGTTTGTACGCATTTATTGCCAACAAC
TTCTTGAACCCGGCAAATCCTGTAATGGATTTTTCGTTCGAACTTGCAACCCTGATTTTAATTATGCTTCTAGGACACTG
GATTGAAATGAATGCATTGATGGGGGCTGGGAATGCATTACAAAAGATGGCGGCTCTGTTGCCTAAGACGGCCCATCTAG
TTACAGATAATGGTGAAACAAAAGAAGTGCCAGTATCTGATTTAAAAGTTGGTCAAGCTTTCCAAGTGCGTTCAGGTGAG
AGTATTCCAGCCGATGGTGTTATTACGGCTGGGGAGTCGACCGTGAATGAAGCACTGGTAACCGGTGAATCTGCTGCCGT
TACCAAGAACGTTGGCGATAAGGTCATTGGTGGTACAATCAACAATAACGGGACGCTAACGGTTAAAATTAGTGGTACTG
GTGACTCCGGCTATCTTTCTCAAGTAATGAAAATGGTTCGAAATGCCCAGCAAGCTAAATCTAAAGCAGAAGATAAAGCT
GATTTAGTTGCCAAGTATCTATTTTACGCGGCACTTAGTGTTGGGATTATTGCTTTCTTTGCCTGGTTACCCCAGGGATT
GGCGACTGCAATGACGATCATGGTGACCGTCTTCGTGATTGCTTGCCCGCATGCATTAGGATTAGCGATTCCATTAGTGG
TTTCTCGTTCTACTACGATTGGCGCTCAAAATGGGCTATTAGTTCGAAATCGCCAAGCCATTGAAGCAAGTCAACATGTT
AGCCACGTTCTCTTGGATAAAACTGGCACGTTAACAGAAGGTAAATTTACGGTGAATGCATTGATTCCAAATGATGGGAT
TGACGAAACAACGTTATTAAGCCGACTGGCCGCCCTTGAAAATAATTCGACTCATCCGCTGGCCCAAGCAATCATTGCTG
AAGCCCAAGCGAAGGACATTGAAGTCGTTGCGGCTGAAAAGTCTCAAAATATTCCAGGCGTTGGTATTTCCGGTAATATT
GATGGCACTGACTATATGATTGTTAATGGTAACTATTTAACGAAGCAAGGGATCAGGTTTGACAAAGCCGCTGCTGATAA
ATGGGCTGCTAAGGGTAATTCCGTCAGCTTCCTATTGCAGGGCACCCAAGTTCAAGGAATGGTTGCTGAAGGCGACACCA
TCAAAGCGAGTGCTAAGGAATTAATTAGTGGTCTTCAGAGGCGAGGAATTACCCCCGTAATGCTCACTGGCGATAATCCA
AAAGCAGCGGAACACGTTGCTAACTTACTAGGATTGACTGAATTCCATGCAGGCCTATTACCAGATGATAAGCAAAAGAT
TATTGCTGATTATCAAGCAAAGGGCAATCACGTTATCATGGTTGGTGACGGCGTAAATGACGCACCAAGTCTTTCCGCGG
CCGATATTGGAATTGCAATTGGTGCCGGAACCGATGTTGCCATTGATTCCGCTGATGTTGTGTTGGTTAAATCAGAACCC
AGCGATATTTTACATTTTCTTGATTTGGCTAAAATCACAAATCGGAAAATGGTTCAAAATCTCTGGTGGGGAGCAGGCTA
CAATATTGTCGCAATTCCACTCGCTGCCGGTGTGTTATCATTTATGGGAATCACTCTAGACCCAGCCGTTGGTGCTGTGG
CCATGGCGATGTCGTCAATTATCGTGGCAATTAATGCGATGGGATTGACCGGTAAAAAGATAAAAAACGTATAA

Protein sequence :
MENKEEHMNMKSMSAKNMENNESNMSHMDHDMTETDHSQMNMNHGDMDMAGTDMMMHGGSMMHMGNLKVKFWVSVVLAIP
VLLLAPIMGLNVSILSFSSPLIVGIIIVLFDTALYFYGGMPFLKGAKAEIQNKSPEMMTLVTLGISVSYFYSLYAFIANN
FLNPANPVMDFSFELATLILIMLLGHWIEMNALMGAGNALQKMAALLPKTAHLVTDNGETKEVPVSDLKVGQAFQVRSGE
SIPADGVITAGESTVNEALVTGESAAVTKNVGDKVIGGTINNNGTLTVKISGTGDSGYLSQVMKMVRNAQQAKSKAEDKA
DLVAKYLFYAALSVGIIAFFAWLPQGLATAMTIMVTVFVIACPHALGLAIPLVVSRSTTIGAQNGLLVRNRQAIEASQHV
SHVLLDKTGTLTEGKFTVNALIPNDGIDETTLLSRLAALENNSTHPLAQAIIAEAQAKDIEVVAAEKSQNIPGVGISGNI
DGTDYMIVNGNYLTKQGIRFDKAAADKWAAKGNSVSFLLQGTQVQGMVAEGDTIKASAKELISGLQRRGITPVMLTGDNP
KAAEHVANLLGLTEFHAGLLPDDKQKIIADYQAKGNHVIMVGDGVNDAPSLSAADIGIAIGAGTDVAIDSADVVLVKSEP
SDILHFLDLAKITNRKMVQNLWWGAGYNIVAIPLAAGVLSFMGITLDPAVGAVAMAMSSIIVAINAMGLTGKKIKNV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SH0105 YP_252020.1 hypothetical protein Not tested SCCmec Protein 3e-126 55

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LAB52_10188 YP_005854908.1 cation transport ATPase BAC0079 Protein 3e-152 53
LAB52_10188 YP_005854908.1 cation transport ATPase BAC0383 Protein 1e-122 49
LAB52_10188 YP_005854908.1 cation transport ATPase BAC0629 Protein 2e-113 46