Gene Information

Name : LAB52_04390 (LAB52_04390)
Accession : YP_005853848.1
Strain : Lactobacillus amylovorus GRL1118
Genome accession: NC_017470
Putative virulence/resistance : Unknown
Product : transposase ORF_A
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 862469 - 862873 bp
Length : 405 bp
Strand : +
Note : COG3436 Transposase and inactivated derivatives

DNA sequence :
ATGATTAACCTCTATGACCTAGGACAGGTCTATATTGTTTGTGGTCGAACTGACATGAGGCGCGGAATCGATGGCCTGGC
TGCCATAGTTAAAGATAAATTTGATTTAGATCCCTTTGCTGGTCAAGTATTTATCTTCTGTGGCGGCAGTCGTGATCGCT
TTAAAGCTTTATATTGGGATGGTCAAGGTTATTGGCTCTTATATAAGAGATTCGAAAATGGCAAGATGAGCTGGCCGAAC
AATCAGGACGAAGTTAGGGCTTTATCACCAGAACAAGTAGACTGGCTAATGAAAGGCTTCTGTATTGAGCCAAGAATAAA
AACAACGAACGCACGCAAAATCAATAGAAATTGCGTGCGTTTCTGGCATGCTTTAAATTATCTAAAAAAGAGCGGAAGAT
CCTAA

Protein sequence :
MINLYDLGQVYIVCGRTDMRRGIDGLAAIVKDKFDLDPFAGQVFIFCGGSRDRFKALYWDGQGYWLLYKRFENGKMSWPN
NQDEVRALSPEQVDWLMKGFCIEPRIKTTNARKINRNCVRFWHALNYLKKSGRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BCAM0247 YP_002232879.1 putative transposase Not tested BcenGI11 Protein 3e-14 43
ECs4546 NP_312573.1 hypothetical protein Not tested LEE Protein 4e-10 41
c3561 NP_755436.1 hypothetical protein Not tested PAI I CFT073 Protein 1e-10 41
ECUMN_3327 YP_002414007.1 putative transposase ORF2, IS66 family Not tested Not named Protein 1e-10 41
unnamed AAC31493.1 L0014 Not tested LEE Protein 3e-10 41
hp4 AAC61716.1 Hp4 Not tested PAI I CFT073 Protein 3e-10 41
c3578 NP_755453.1 hypothetical protein Not tested PAI I CFT073 Protein 4e-10 41
unnamed AAL99258.1 unknown Not tested LEE Protein 3e-10 41
Z4336 NP_289561.1 hypothetical protein Not tested OI-122 Protein 4e-10 41
unnamed ACU09438.1 IS66 family element orf2 Not tested LEE Protein 3e-10 41
Z5097 NP_290248.1 prophage-associated protein Not tested LEE Protein 4e-10 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LAB52_04390 YP_005853848.1 transposase ORF_A VFG1709 Protein 1e-10 41
LAB52_04390 YP_005853848.1 transposase ORF_A VFG0792 Protein 1e-10 41
LAB52_04390 YP_005853848.1 transposase ORF_A VFG1698 Protein 3e-11 41