Gene Information

Name : LAB52_09385 (LAB52_09385)
Accession : YP_005854786.1
Strain : Lactobacillus amylovorus GRL1118
Genome accession: NC_017470
Putative virulence/resistance : Resistance
Product : ABC transporter ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1828316 - 1829017 bp
Length : 702 bp
Strand : +
Note : COG1136 ABC-type antimicrobial peptide transport system, ATPase component

DNA sequence : 
ATGGCTTACATTGAACTTAAAAATAATACCAAAATTTATCAATCCGGCGATACGCAAATCTATGCCAACAAAGATATCAC
CTTCTCTGTCGCCAAAGGAGAATTAGTCATCATCCTTGGCTCATCTGGTGCCGGCAAATCTACTTTGCTTAACATTCTAG
GCGGCATGGAGCCTAATACCAGTGGTGATGTTATCGTTGCTGGCAAAAATATCGCTGGTTATAACGCTAAAGAGCTGACG
ACGTATCGGCGCAACGACATCGGTTTCGTTTTCCAATTCTACAACTTAATTCCTAACTTAACGGCCAAAGAAAACGTGGA
ATTAGCTGCACAAATCGTACCGAATGCGATGGACGCAGACGAAGCGCTAAAATACGTCGATTTGGGCGATCGTGAAAACA
ACTTTCCGGCTCAACTATCTGGTGGTGAACAACAGCGTGTAGCTATCGCTCGTGCCATTGCCAAAAAGCCAGAGCTGCTT
TTATGTGATGAACCTACAGGAGCACTCGACTACCAAACTGGTAAACGTATCTTAAAGATCCTGCAAAACATGAGCCGCGA
GAATGGTTCCACCGTTTTAATCGTTACTCATAACGCTGCTATTGCTCCAATTGCCGACAAGGTGATCCGCATCCACGATG
GCTGCATTCAGGATATTCACATTAATAAAAAGCCTGCTGATATCAGTACTATTGAATGGTAG

Protein sequence : 
MAYIELKNNTKIYQSGDTQIYANKDITFSVAKGELVIILGSSGAGKSTLLNILGGMEPNTSGDVIVAGKNIAGYNAKELT
TYRRNDIGFVFQFYNLIPNLTAKENVELAAQIVPNAMDADEALKYVDLGDRENNFPAQLSGGEQQRVAIARAIAKKPELL
LCDEPTGALDYQTGKRILKILQNMSRENGSTVLIVTHNAAIAPIADKVIRIHDGCIQDIHINKKPADISTIEW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-33 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-34 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 5e-34 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-34 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LAB52_09385 YP_005854786.1 ABC transporter ATPase NC_012469.1.7685735. Protein 3e-74 65
LAB52_09385 YP_005854786.1 ABC transporter ATPase NC_012469.1.7686878. Protein 1e-37 44
LAB52_09385 YP_005854786.1 ABC transporter ATPase CP001581.1.gene798.p Protein 5e-44 43
LAB52_09385 YP_005854786.1 ABC transporter ATPase CP001581.1.gene598.p Protein 4e-38 42
LAB52_09385 YP_005854786.1 ABC transporter ATPase NC_012469.1.7686946. Protein 2e-22 41