Gene Information

Name : LAB52_08585 (LAB52_08585)
Accession : YP_005854639.1
Strain : Lactobacillus amylovorus GRL1118
Genome accession: NC_017470
Putative virulence/resistance : Unknown
Product : transposase ORF_A
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1681058 - 1681405 bp
Length : 348 bp
Strand : +
Note : COG3436 Transposase and inactivated derivatives

DNA sequence :
ATGATTAACCTCTATGACCTAGGACAGGTCTATATTGTTTGTGGTCGAACTGACATGAGGCGCGGAATCGATGGCCTGGC
TGCCATAGTTAAAGATAAATTTGATTTAGATCCCTTTGCTGGTCAGGTATTTATCTTCTGTGGCGGCAGTCGTGATCACT
TTAAAGCTTTATATTGGGCTGGTCAAGGTTATTGGCTCTTATATAAGAGATTCGAAAATGGCAAGATGAGCTGGCCGAAC
AATCAGGACGAAGTTAGGGCTTTATCACCAGAACAAGTAGACTGGCTAATGAAAGGCTTCTGTATTGAGCCAAGAATAAA
AACAACGAACGCACGCAATTTCTATTGA

Protein sequence :
MINLYDLGQVYIVCGRTDMRRGIDGLAAIVKDKFDLDPFAGQVFIFCGGSRDHFKALYWAGQGYWLLYKRFENGKMSWPN
NQDEVRALSPEQVDWLMKGFCIEPRIKTTNARNFY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
l0014 CAD33776.1 L0014 protein Not tested PAI I 536 Protein 4e-09 45
BCAM0247 YP_002232879.1 putative transposase Not tested BcenGI11 Protein 2e-14 43
unnamed AAL99258.1 unknown Not tested LEE Protein 1e-10 41
Z5097 NP_290248.1 prophage-associated protein Not tested LEE Protein 2e-10 41
unnamed ACU09438.1 IS66 family element orf2 Not tested LEE Protein 1e-10 41
ECs4546 NP_312573.1 hypothetical protein Not tested LEE Protein 2e-10 41
c3561 NP_755436.1 hypothetical protein Not tested PAI I CFT073 Protein 4e-11 41
ECUMN_3327 YP_002414007.1 putative transposase ORF2, IS66 family Not tested Not named Protein 4e-11 41
unnamed AAC31493.1 L0014 Not tested LEE Protein 1e-10 41
c3578 NP_755453.1 hypothetical protein Not tested PAI I CFT073 Protein 2e-10 41
hp4 AAC61716.1 Hp4 Not tested PAI I CFT073 Protein 1e-10 41
Z4336 NP_289561.1 hypothetical protein Not tested OI-122 Protein 2e-10 41
Z1132 NP_286667.1 hypothetical protein Not tested TAI Protein 1e-09 41
Z1571 NP_287075.1 hypothetical protein Not tested TAI Protein 1e-09 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LAB52_08585 YP_005854639.1 transposase ORF_A VFG1517 Protein 2e-09 45
LAB52_08585 YP_005854639.1 transposase ORF_A VFG1698 Protein 1e-11 41
LAB52_08585 YP_005854639.1 transposase ORF_A VFG1709 Protein 6e-11 41
LAB52_08585 YP_005854639.1 transposase ORF_A VFG0792 Protein 6e-11 41