Gene Information

Name : LAB52_08315 (LAB52_08315)
Accession : YP_005854585.1
Strain : Lactobacillus amylovorus GRL1118
Genome accession: NC_017470
Putative virulence/resistance : Virulence
Product : response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1636453 - 1637154 bp
Length : 702 bp
Strand : +
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGGATGAAAAAGATGTCAAAATTCTGCTAGTTGAAGATGAAGAAGCAGTGGCTAGCTTTGTGAAAACAGAGCTGGGATT
TGAAGGCTACCAGGTAATTTGGGCACAAGATGGTAAGGAGGCACTCGAGCTTTTTCAAAAAGAAGATCCTACCTTAATCC
TGCTTGATTGGATGCTGCCAGTTTATGACGGCATCACTGTATTGCGTAGAATCCGCAAACAAAGCGATGTGCCAATCATT
ATGTTAACGGCGAAAAATTCCGCTTCTGACATTAGTTCTGCTCTTGATCAAGGCTTAGATGACTACATTACCAAACCTTT
TGAAATTGAGGAACTTTTTGCCAGAATTCGGGTTATTTTGCGTCGCTTAAAAAAGACCCAAGAACAAAATGCAGCCCCTA
CTTCCACCTTTACTTTTGGTCCATTAAAAATCGACTTGGTAAAGCACGAATTCTACTGCAATGACGAAAAGATTTATTTA
ACGCCAAAAGAATTCGCCTTAATGACCGAACTGATGCAGGATCCCGAAAAAGTAAAAAGCCGTGATGAACTGCTCGACGT
CGTCTGGGGCTATGACTTCGTGGGCCAAACCAACACGGTTGATGTCTACATTAGAACCATCCGCAACAAGTTGGGCGAAC
CATATAAGAAGCTCATCAAAACGGTGCGCGGCCTCGGCTATTGTTTAAGAGAAGACGATTAA

Protein sequence : 
MDEKDVKILLVEDEEAVASFVKTELGFEGYQVIWAQDGKEALELFQKEDPTLILLDWMLPVYDGITVLRRIRKQSDVPII
MLTAKNSASDISSALDQGLDDYITKPFEIEELFARIRVILRRLKKTQEQNAAPTSTFTFGPLKIDLVKHEFYCNDEKIYL
TPKEFALMTELMQDPEKVKSRDELLDVVWGYDFVGQTNTVDVYIRTIRNKLGEPYKKLIKTVRGLGYCLREDD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-32 41
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 7e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LAB52_08315 YP_005854585.1 response regulator NC_002952.2859905.p0 Protein 2e-36 45
LAB52_08315 YP_005854585.1 response regulator NC_002745.1124361.p0 Protein 2e-36 45
LAB52_08315 YP_005854585.1 response regulator NC_009782.5559369.p0 Protein 2e-36 45
LAB52_08315 YP_005854585.1 response regulator NC_002951.3237708.p0 Protein 2e-36 45
LAB52_08315 YP_005854585.1 response regulator NC_002758.1121668.p0 Protein 2e-36 45
LAB52_08315 YP_005854585.1 response regulator NC_003923.1003749.p0 Protein 1e-36 45
LAB52_08315 YP_005854585.1 response regulator NC_009641.5332272.p0 Protein 2e-36 45
LAB52_08315 YP_005854585.1 response regulator NC_013450.8614421.p0 Protein 2e-36 45
LAB52_08315 YP_005854585.1 response regulator NC_007793.3914279.p0 Protein 2e-36 45
LAB52_08315 YP_005854585.1 response regulator NC_007622.3794472.p0 Protein 2e-36 45
LAB52_08315 YP_005854585.1 response regulator HE999704.1.gene1528. Protein 5e-33 44
LAB52_08315 YP_005854585.1 response regulator HE999704.1.gene2815. Protein 5e-36 44
LAB52_08315 YP_005854585.1 response regulator NC_002952.2859858.p0 Protein 2e-33 43
LAB52_08315 YP_005854585.1 response regulator NC_007622.3794948.p0 Protein 2e-33 43
LAB52_08315 YP_005854585.1 response regulator NC_003923.1003417.p0 Protein 2e-33 43
LAB52_08315 YP_005854585.1 response regulator NC_013450.8614146.p0 Protein 2e-33 43
LAB52_08315 YP_005854585.1 response regulator NC_002951.3238224.p0 Protein 2e-33 43
LAB52_08315 YP_005854585.1 response regulator NC_007793.3914065.p0 Protein 2e-33 43
LAB52_08315 YP_005854585.1 response regulator NC_002758.1121390.p0 Protein 2e-33 43
LAB52_08315 YP_005854585.1 response regulator NC_010079.5776364.p0 Protein 2e-33 43
LAB52_08315 YP_005854585.1 response regulator FJ349556.1.orf0.gene Protein 3e-33 43
LAB52_08315 YP_005854585.1 response regulator AE015929.1.gene1106. Protein 1e-28 41
LAB52_08315 YP_005854585.1 response regulator NC_012469.1.7686381. Protein 8e-34 41
LAB52_08315 YP_005854585.1 response regulator AF155139.2.orf0.gene Protein 4e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LAB52_08315 YP_005854585.1 response regulator VFG1390 Protein 3e-40 42
LAB52_08315 YP_005854585.1 response regulator VFG0596 Protein 4e-33 41