Gene Information

Name : LAB52_06765 (LAB52_06765)
Accession : YP_005854283.1
Strain : Lactobacillus amylovorus GRL1118
Genome accession: NC_017470
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1326174 - 1327880 bp
Length : 1707 bp
Strand : +
Note : COG3666 Transposase and inactivated derivatives

DNA sequence :
ATGTATCAAAATTATATCACAGGACAAACTACTTTATCATTAAATTTAGATTTTTCTATCCCTGCAAATCACATTGCCAG
TGTTATCAGTGAATTCGTTGATTCTATTCCTAACGAAGTTATCTTAGAAACCACTTCTAATACAGGCAGACCTGCATATC
ACCCGGCAATGATGCTTAAGATTTTACTCTTTGCTTATTCTAGAAGAGTTTTTTCAGGCAGAAAAATTGAAAGAATGCTA
GAAGAGAATCTGCCCATGATGATTTTGGCTGACAATAGAAAGATTTCTTATCACACGATCAATAATTTCAGATCAAGCGA
CCATGCCAATAAGGTAATTAAGCAGTGCTTTGTCTACTTTACTTCATTATTAGAAGATGAGGGATTAATCCGTGAAAATG
CAGTTTTTATCGATGGTACTAAGATTGAAGCGGACGCCAACAGGTACACTTTTGTCTGGCGAAAAGCTATTGAGAAGTAT
CATGCCAAGTTAAAGGAAGACGTGTCTGCTTTATATGAAGAACTGATCAATAAAGAAGTAGTCAAGGCCATGGCCAAAGA
AGAAGCCCAAACTAGTCAAGGCTTAGAGATTCTGGCTCAAGAAACGGAAAAAGAAGTTGAGAAGCTGACCGAGAAAATTG
ATCGAGAACCTAAAGCCATTCCAGGCGGATCAAAAAATAAGGCCAAGCGCCGTGAATTAAAGAAGATCGCACATAAACTC
AGAAAAGATTTTATTCCGCGTGCTAAAAAGTACGAAGAAGCTGAAGAGATCTTTGCTGGCCGTAACAGCTACTCTAAAAC
AGATCATGATGCCACCTTCATGCATATGAAAGAAGATCATATGAAAAATGGGCAGCTAAAGCCAGGCTACAATATTCAGG
CAGCGACTACTAATCAATACATAGTTGATTTTGCCCCGTTTCCTAATCCGACTGACTTTAGAACATTCGAACCATTTCTA
GACCAAATGAAGTCCAGAGGAATTCTCGATAAGTTTCAAAATATTGTGGCCGATGCGGGCTATGGCAGTGAATACAATTA
CTCGATTCTGGAAGAGAATTATTCAGATAAGAACTATCAGATTCCGTATACCCAATACGAAAAAGAACAAACGCGAAAAT
ATAAGAAAGATCCATCAAAGGTCGACAACTGGTACTATAACGAAGAAGAAGACTATTACGTAGATAAATCAGGCGTCCGC
TTCAACTTCAAATATTATAGTCAAAGAAAAGATCGATCTACTGGCATGGTCAGAAACTTCAAAATTTATGAAGCTGATGA
GTTCCAGCTAACTGAAGAACTGACCCAATTGGCTAAAACCAAAACAGGTCGACAAAGACAGATTCACTACAATCCTAACT
GGCAGTATTTAAAAGAAAAAGCAAAAGAGACTCTTCAAAGCGAAGAAGGCAAACGCATCTATGGCTGTCGCAAGTCAGAT
GTGGAGCCAATTTTTGGGCACATGAAGAGTGTATTTGGTATGCGCAGAACGCATTTAAGAGGCAAAAAGAAAGTCGAAAC
GGATGTCGGTATCATGTTCATGACGATGAATCTGAAAAAATATGGAGCCAACAAGAAGGTAAAGCCTTCGAATTTTCATT
TCAAAAACAAAAAACACAGGAATTCACTAAAAATAATGAATTGCTGTGTTTTTATATCCGGGCTAAAAATCGAGTTTTTT
CCCAGACACTTTTCTTTTATTTCATAA

Protein sequence :
MYQNYITGQTTLSLNLDFSIPANHIASVISEFVDSIPNEVILETTSNTGRPAYHPAMMLKILLFAYSRRVFSGRKIERML
EENLPMMILADNRKISYHTINNFRSSDHANKVIKQCFVYFTSLLEDEGLIRENAVFIDGTKIEADANRYTFVWRKAIEKY
HAKLKEDVSALYEELINKEVVKAMAKEEAQTSQGLEILAQETEKEVEKLTEKIDREPKAIPGGSKNKAKRRELKKIAHKL
RKDFIPRAKKYEEAEEIFAGRNSYSKTDHDATFMHMKEDHMKNGQLKPGYNIQAATTNQYIVDFAPFPNPTDFRTFEPFL
DQMKSRGILDKFQNIVADAGYGSEYNYSILEENYSDKNYQIPYTQYEKEQTRKYKKDPSKVDNWYYNEEEDYYVDKSGVR
FNFKYYSQRKDRSTGMVRNFKIYEADEFQLTEELTQLAKTKTGRQRQIHYNPNWQYLKEKAKETLQSEEGKRIYGCRKSD
VEPIFGHMKSVFGMRRTHLRGKKKVETDVGIMFMTMNLKKYGANKKVKPSNFHFKNKKHRNSLKIMNCCVFISGLKIEFF
PRHFSFIS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnp YP_254534.1 IS1272 transposase Not tested ¥ðSh2 Protein 1e-66 42
SACOL0036 YP_184947.1 IS1272 transposase Not tested Type-I SCCmec Protein 1e-70 42
SAMSHR1132_00350 YP_005324559.1 putative transposase Not tested Type-IIIinv SCCmec Protein 1e-70 42
MW0034 NP_644849.1 hypothetical protein Not tested Type-IV SCCmec Protein 1e-70 42
unnamed BAA86649.1 hypothetical protein Not tested Type-I SCCmec Protein 8e-71 42
SAUSA300_0034 YP_492755.1 IS1272, transposase Not tested Type-IV SCCmec Protein 4e-68 41