Gene Information

Name : LBU_0477 (LBU_0477)
Accession : YP_005851686.1
Strain : Lactobacillus delbrueckii 2038
Genome accession: NC_017469
Putative virulence/resistance : Virulence
Product : ATP-dependent Clp protease, ATP-binding subunit
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 477473 - 479668 bp
Length : 2196 bp
Strand : -
Note : -

DNA sequence :
ATGTTCTGTCAAAACTGCCACCAACGGCAGGCCTCGATACATCTTTACACGAAGATCAACGGCCAAAACAAAGAAATCGA
CTTATGTCAGCAATGCTACCAAGAGTTAAGGAATCAACAAGGCAATCAAATGAATAATGACAACTTTTTCGGCGACTTTG
ACGAACTCTTCAACGCTTTGAACGGGCGGTCAAATGGCGCAAACCGTGACAACAACCAAAATCCATCCGGCCCGACCCCT
GGCCGGGGCGGCAATGGCGGCGGCCAGTCCCTGCTTGACCAGTTCGGGACCGACTTAACAGCTCTGGCCAAGAAGGGCAA
GATCGACCCAGTTATCGGCCGAGACCGAGAAATCGCCCGAGTAATTGAAATCCTCAACCGGCGGACCAAGAACAACCCGG
TCCTGATCGGGGAAGCCGGGGTCGGCAAGACCGCGGTCGTTGAAGGCCTGGCCCAGGACATCGTGGACGGGTCAGTTCCA
GCCAAGTTACAAAACAAGCGGATCATCTCCCTCAACATGGTTTCCATGGTCCAAGGTACCGGGATCCGGGGCCAGTTTGA
GCAAAGGATGCAGCAGCTGGTCAAGGAACTGCAGAGCCAGCCGGACATCATCCTCTTTATCGACGAAATCCATGAAATCG
TCGGCGTCGGCAATTCTGAAGGCGGCATGGACGCCGGCAACATCATCAAGCCGGCTCTGGCCAGAGGTGAGCTGCAGTTA
GTCGGGGCTACGACTATCAAGGAATTCCGGGAAATCGAAAAGGACTCCGCCCTGGCCCGGCGCTTCCAGCCAGTTGAAGT
CAAGGAACCAAGCATCGACGAGACAATCAAGATCCTCAAGGGGATCCAGAAGCGCTACGAGGACTACCACCACGTCAAAT
ACACTGACAACGCCATCGAAGCCGCCGTCAAGCTGTCTGCCCGCTACATCCAAGACCGCTTCCTGCCAGACAAGGCCATC
GACCTGCTGGACGAAGCCGGGTCAAGAATGAACCTGACCATCCCTTACATCGATAAGGAAAAGATCCAGGAAAGAATCGA
CGCGGCTGAGAAGCTCAAGCAGGATGCCTTGAAGAACGAAGACTACGAAAAAGCTGCCTACTACCGTGACCAGATCGAAA
AATACGAGAAGCTGAAGGACCAAAACGTCGACCCGGACAAGGCCCCGACCATTACGGCCAAAGTCATGGACAAGATCGTG
GAAGAAAAGACCAACATCCCGGTCGGCGACATCCAGGCACAAGAAGAAAAACAGCTGGCCAACCTGGCCAGCGACCTCAA
GGCTAAGGTTATCGGCCAGGACGAGGCCGTTGACAAGGTGGCCCGGGCCATCAGAAGAAACCGGATCGGCTTCAACAAGT
CCGGCCGGCCAATCGGCTCCTTCCTCTTTGTTGGCCCGACCGGGGTCGGCAAGACCGAGCTGGCCAAGCAGCTGGCCTTG
AAGATGTTCGGCAGCGAAGACGCCATGATCCGCTTCGACATGTCCGAATTCATGGAGCAATACTCCGTCTCCAAATTGAT
CGGGTCTGCCCCGGGCTATGTCGGCTATGAAGAAGCCGGCCAATTGACCGAACGGGTCCGCCACAACCCATACAGCTTGA
TCCTTTTGGACGAAGTTGAAAAGGCCCACCCAGATGTTTTGAACCTCTTCTTGCAGATTCTTGACGACGGCCGCTTGACC
GACTCACAAGGGCGGACTGTTTCCTTCAAGGACACGATCATCATCATGACCTCAAACGCCGGCCAGGGAATCAAGACGGC
CAGCGTAGGCTTCACGGCAGAAAACAACAAGAATGAAGCTGAAGAAACCCGCAAGGTGATGAGCCAGTACTTCAAGCCGG
AATTCCTGAACCGCTTTGACGACATCATCCAGTTCCACCCATTGAGCAAGGACAACCTCCTGCAGATCGTCAACCTCCTT
TTGGACAAGACCAACGCCATGGTCAGCGACCAGGGCCTACACATCAAGGTTACCGACGCGGCCAAGGACAAGCTGGTTGA
GGAAGGCTACGATCCGGAAATGGGCGCTCGTCCGCTTCGCCGGGTCATCCAGGAAGAAATTGAAGACAAGGTGGCCGACT
ACAAGCTGGACCACACTGAAGCCAAGCAATTAGTGGTGGACTTAAAGGACGGGGAAATCACGATTTCCGAAGAAGTTCCC
GCCCTGCCAGCCACTGAAGCGAGCAAAGAAAAATAA

Protein sequence :
MFCQNCHQRQASIHLYTKINGQNKEIDLCQQCYQELRNQQGNQMNNDNFFGDFDELFNALNGRSNGANRDNNQNPSGPTP
GRGGNGGGQSLLDQFGTDLTALAKKGKIDPVIGRDREIARVIEILNRRTKNNPVLIGEAGVGKTAVVEGLAQDIVDGSVP
AKLQNKRIISLNMVSMVQGTGIRGQFEQRMQQLVKELQSQPDIILFIDEIHEIVGVGNSEGGMDAGNIIKPALARGELQL
VGATTIKEFREIEKDSALARRFQPVEVKEPSIDETIKILKGIQKRYEDYHHVKYTDNAIEAAVKLSARYIQDRFLPDKAI
DLLDEAGSRMNLTIPYIDKEKIQERIDAAEKLKQDALKNEDYEKAAYYRDQIEKYEKLKDQNVDPDKAPTITAKVMDKIV
EEKTNIPVGDIQAQEEKQLANLASDLKAKVIGQDEAVDKVARAIRRNRIGFNKSGRPIGSFLFVGPTGVGKTELAKQLAL
KMFGSEDAMIRFDMSEFMEQYSVSKLIGSAPGYVGYEEAGQLTERVRHNPYSLILLDEVEKAHPDVLNLFLQILDDGRLT
DSQGRTVSFKDTIIIMTSNAGQGIKTASVGFTAENNKNEAEETRKVMSQYFKPEFLNRFDDIIQFHPLSKDNLLQIVNLL
LDKTNAMVSDQGLHIKVTDAAKDKLVEEGYDPEMGARPLRRVIQEEIEDKVADYKLDHTEAKQLVVDLKDGEITISEEVP
ALPATEASKEK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 2e-150 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LBU_0477 YP_005851686.1 ATP-dependent Clp protease, ATP-binding subunit VFG0080 Protein 0.0 58
LBU_0477 YP_005851686.1 ATP-dependent Clp protease, ATP-binding subunit VFG0079 Protein 4e-157 51