Gene Information

Name : LBU_1722 (LBU_1722)
Accession : YP_005852931.1
Strain : Lactobacillus delbrueckii 2038
Genome accession: NC_017469
Putative virulence/resistance : Virulence
Product : Putative Clp-like ATP-dependent protease, ATP-binding subunit
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1783329 - 1785419 bp
Length : 2091 bp
Strand : +
Note : -

DNA sequence :
ATGGATTACAACAACTTTAACGATATGGATGATCTTTTTAGAGAATTAATGAACGGCTTGGGCGGCTTCAATTCCGAAAA
CCGCCGCTACTTGATCAACGGCCGGCAGGTAACCCCGGAAGAATTCGCTGAATACCAGAAGACTGGCCAGCTGCCAGGAC
ATGGCCAGGCCAAGAATTTCCAGGGCAAGCAAAAGAAGGCCAACGGCATTTTGGAAAAGTTAGGCCGGAACCTGACCGCT
GAAGCCCGGGAAGGCAAGCTCGACCCGGTCATCGGCCGGAACAAGGAAATCCAGGAAACGGCGGAAATCCTCTCCCGCCG
GATCAAGAACAACCCAGTCCTGGTCGGGGACGCCGGGGTCGGCAAGACCGCGGTCGTTGAAGGCTTAGCCCAGGCAATTG
TCCACGGGGACGTGCCGGAAGCAATCAAGAACAAGGAAATTATTTCCATCGACATCTCCAGCCTGGAAGCCGGGACCCAG
TACCGGGGCTCCTTTGAGCAGAACATCCAGGACCTGGTCAAGGAAGTCAAGGACAGAGGCAATGTCATCCTCTTCTTTGA
CGAAATCCACCAGATCCTCGGTGCCGGCGGCATGGGCGACGGTAATGGTTCCAAGGGGATGAGCGACATCTTGAAGCCGG
CTTTGTCCAGAGGTGAAATCACCGTAATCGGGGCCACCACCCAGGATGAATACCGGAACACCATCATGAAGGACGCCGCT
TTGGCCCGCCGCTTCAACGAAGTAACTGTCAACGCTCCGAGTCAAGCTGACACCTTCAAGATCTTGATGGGGATCCGGTC
CTTATACGAAAAGCACCACAATGTGGAACTGCCAGACGACGTCTTGAAGGCCGCCATCGACTACTCAGTCCAGTACATTC
CGCAGCGGTCCCTGCCTGACAAGGCCATCGACCTTTTGGACATGACCGCCGCTCACCTGGCTGCCCAGCACCCGGTGACT
GACGCCAAGACCATCGAAAAGCAGATCAAGGAAGAAAAGCAGGCTCAGAAAAAGGCCGCTGAAAATGAAGACTACCAAGC
CGCCCTTGACCACAAGACCAAGGCTGAAAAGCTGGAAAAGCAGCTGAGTGAAAACCACGAGGAAAGAAAGACCGTGGCTA
CCCCGGCTGACGTGGCCGCTGCCGTTGAACGCCTGACCGGGATTCCGGTTTCCAAGATGGGCGCCAGCGACATCGAACGC
TTGAAGGGGCTCAGCAGTCGCTTAAAGGGCAAGATCATCGGCCAAGATGAAGCCGTTGAAGCAGTAGCCAAGGCTATCCG
CCGCAACCGGGCTGGCTTTGACGAAGGCAACCGGCCAATCGGCTCCTTCCTCTTCGTCGGCCCGACCGGGGTCGGCAAGA
CGGAACTGGCCAAGCAGCTGGCCTTGGACATGTTTGGCTCTAAGGATGCCATCATCCGCCTGGATATGTCTGAATACTCC
GACCGGACAGCCGTTTCCAAGCTGATCGGGACCACGGCCGGCTACGTGGGCTACGATGACAACTCCAACACCTTGACGGA
AAAGGTCCGCCGCAACCCTTACTCAATCATCCTTTTGGACGAAATTGAAAAGGCTGACCCGCAGGTCATCACCCTGCTCT
TGCAAGTGCTTGACGACGGCCGCTTAACTGACGGGCAAGGCAACACGGTCAACTTCAAGAACACCATCATTATCGCTACC
TCTAACGCCGGTTTCGGCAATGAACAGCTGATGGGCGACGCTAAGAAGGACGAGAAGCTGATGGACCGGTTAGCTCCTTA
CTTCAGACCGGAATTCCTCAACCGCTTCAACGCGGTCATCGAATTCAGCCACCTGACCAAGGAAGACTTGAAGGAAATCG
TTAACTTGATGCTGGCTGACGTAAACAAGACTCTGGCCAAGAAGGGCATCAGCCTGACTGTCAGTGAAAGCGCCAAGGAC
TACTTGATTGAACAAGGCTACGACGAAGCTATGGGGGCACGGCCGCTGAGAAGAGTCATCGAACAGGAAATCCGTGACAA
AGTAACTGATTACTACCTGGACCACTTGGACGTCAAGAAACTGAAGGCGGACATGGTCGATGGGGCCCTGGTTATCAGTG
AAGATAAATAA

Protein sequence :
MDYNNFNDMDDLFRELMNGLGGFNSENRRYLINGRQVTPEEFAEYQKTGQLPGHGQAKNFQGKQKKANGILEKLGRNLTA
EAREGKLDPVIGRNKEIQETAEILSRRIKNNPVLVGDAGVGKTAVVEGLAQAIVHGDVPEAIKNKEIISIDISSLEAGTQ
YRGSFEQNIQDLVKEVKDRGNVILFFDEIHQILGAGGMGDGNGSKGMSDILKPALSRGEITVIGATTQDEYRNTIMKDAA
LARRFNEVTVNAPSQADTFKILMGIRSLYEKHHNVELPDDVLKAAIDYSVQYIPQRSLPDKAIDLLDMTAAHLAAQHPVT
DAKTIEKQIKEEKQAQKKAAENEDYQAALDHKTKAEKLEKQLSENHEERKTVATPADVAAAVERLTGIPVSKMGASDIER
LKGLSSRLKGKIIGQDEAVEAVAKAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLALDMFGSKDAIIRLDMSEYS
DRTAVSKLIGTTAGYVGYDDNSNTLTEKVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTIIIAT
SNAGFGNEQLMGDAKKDEKLMDRLAPYFRPEFLNRFNAVIEFSHLTKEDLKEIVNLMLADVNKTLAKKGISLTVSESAKD
YLIEQGYDEAMGARPLRRVIEQEIRDKVTDYYLDHLDVKKLKADMVDGALVISEDK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 2e-127 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LBU_1722 YP_005852931.1 Putative Clp-like ATP-dependent protease, ATP-binding subunit VFG0080 Protein 1e-141 49
LBU_1722 YP_005852931.1 Putative Clp-like ATP-dependent protease, ATP-binding subunit VFG0079 Protein 5e-132 45