Gene Information

Name : LBU_0101 (LBU_0101)
Accession : YP_005851310.1
Strain : Lactobacillus delbrueckii 2038
Genome accession: NC_017469
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 109988 - 110467 bp
Length : 480 bp
Strand : +
Note : -

DNA sequence :
ATGAATATCAAAATTGTTTGCGTTGGAAAATTAAAAGAGAAGTATTTTAAGGACGGGATCGCGGAGTACCAGAAGCGGCT
GAGCCGTTTTGCCAAGGTGGAGATCGTGCAGGTGCCGGATGAAAAGGCGCCGGAAAGCCTCAGCCCGGCCCAGATGGAAG
AGGTCAAGAAGCGGGAAGGCGAGCGGATCCTGAGCAAGATCAAGGACAAGGAATATGTTTACGTTCTGGCCATTAAGGGC
AAAGAGCGGGCTAGTGAAGAGTTCGCCAAGGAACTGAAGAACCTGGGGACCTACGGGCATTCCGACATTACTTTCGTGAT
CGGGGGAAGCTTGGGGACCAGTGACGCGGTCAACAAGCGGGCCAACGACCTCTTCAGTTTCGGCAAGCTGACCATGCCCC
ACCAATTGATGCGGCTGGTTTTGATTGAGCAGATCTACCGGGCCTTTATGATCAACTCCGGCAGTCCTTACCACAAGTAG

Protein sequence :
MNIKIVCVGKLKEKYFKDGIAEYQKRLSRFAKVEIVQVPDEKAPESLSPAQMEEVKKREGERILSKIKDKEYVYVLAIKG
KERASEEFAKELKNLGTYGHSDITFVIGGSLGTSDAVNKRANDLFSFGKLTMPHQLMRLVLIEQIYRAFMINSGSPYHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 2e-39 56
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 2e-39 56
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 2e-39 56
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 2e-39 56
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 2e-39 56
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 2e-39 56
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 2e-39 56
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 2e-39 56
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 5e-40 56
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 2e-39 56
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 5e-40 56
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 2e-39 56
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 2e-39 56
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 2e-39 56
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 4e-39 55
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 1e-35 55
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 2e-39 55
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 5e-39 55
unnamed ACL99851.1 hypothetical protein Not tested Type-V SCCmec Protein 3e-22 52