Gene Information

Name : LBHH_1968 (LBHH_1968)
Accession : YP_005851120.1
Strain : Lactobacillus helveticus H10
Genome accession: NC_017467
Putative virulence/resistance : Resistance
Product : Macrolide ABC superfamily ATP binding cassette transporter, ATP-binding/permease protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2074079 - 2074789 bp
Length : 711 bp
Strand : +
Note : -

DNA sequence : 
TTGATAATTATGGCTTATATAAAATTGAAAAATAATACTAAAATTTATCAATCTGGGTATACAACTATTTATACCAACAA
AGATATTACTTTTTCTATTGATAAGGGAGAATTAGTAGTCATTTTGGGCTCTTCAGGAGCTGGCAAGTCAACGTTGCTGA
ACATTTTAGGCGGGATGGAACCTAATACAAGCGGTGACGTGATTGTAGCAGGTAAAAATATTACATCTTATAACGCCAAA
CAATTAACAACTTACCGCAGAAATAATGTAGGTTTTGTCTTTCAATTCTATAATTTAATTCCTAACCTAACCGCAAAAGA
GAATGTAGAATTGGCAGCGCAAATCGTTCCGGATGCTATGAATCCAGATGAAGCATTAAGAGAAGTCGATTTAACTGATC
GCGAGCAAAACTTTCCTGCTCAATTATCTGGTGGTGAACAGCAACGTGTAGCGATCGCACGTGCTATCGCCAAAAAGCCA
GAATTATTATTGTGTGATGAACCGACCGGAGCACTGGATTACAAAACTGGTAAACGGATTTTAAAGATTCTGCAAGACAT
GAGCCGAAAAAATGGCTCTACTGTACTGATCGTTACTCATAACGCTGCTATTGCCCCAATTGCGGATAAGGTGATTCGTA
TTCATGATGGCGGTATTCAGAAGATTGAGACTAATGATCATCCTGCCGATATCAGTAGCATTGAATGGTAG

Protein sequence : 
MIIMAYIKLKNNTKIYQSGYTTIYTNKDITFSIDKGELVVILGSSGAGKSTLLNILGGMEPNTSGDVIVAGKNITSYNAK
QLTTYRRNNVGFVFQFYNLIPNLTAKENVELAAQIVPDAMNPDEALREVDLTDREQNFPAQLSGGEQQRVAIARAIAKKP
ELLLCDEPTGALDYKTGKRILKILQDMSRKNGSTVLIVTHNAAIAPIADKVIRIHDGGIQKIETNDHPADISSIEW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-33 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-34 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-34 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-34 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LBHH_1968 YP_005851120.1 Macrolide ABC superfamily ATP binding cassette transporter, ATP-binding/permease protein NC_012469.1.7685735. Protein 2e-74 65
LBHH_1968 YP_005851120.1 Macrolide ABC superfamily ATP binding cassette transporter, ATP-binding/permease protein CP001581.1.gene598.p Protein 4e-39 44
LBHH_1968 YP_005851120.1 Macrolide ABC superfamily ATP binding cassette transporter, ATP-binding/permease protein CP001581.1.gene798.p Protein 7e-43 43
LBHH_1968 YP_005851120.1 Macrolide ABC superfamily ATP binding cassette transporter, ATP-binding/permease protein NC_012469.1.7686878. Protein 3e-37 43