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Name : LC40_0963 (LC40_0963) Accession : YP_005849030.1 Strain : Lactobacillus fermentum CECT 5716 Genome accession: NC_017465 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease ATP-binding subunit Function : - COG functional category : - COG ID : - EC number : - Position : 1723957 - 1726461 bp Length : 2505 bp Strand : - Note : - DNA sequence : ATGGATAACGAAAATCTATACACACCAAGCGCCAATAACGTCTTGCGGATTGCCCAGGAACAGGCGCGCTTTTTTAAACA CCAAGCCGTCGGGACGGAACACCTCCTCTTGGCCTTGAGCCTCGAAAAGGTGGGGGTGGCTGCGACGGTTTTGCACCAGT TTAACGTCACTAGTGACGACCTGCGTGAAGAGATTGAACGCTACACCGGGTACGGAACCATGCAAAACACCGCTAGCGAT GCGTACCTGCCTAATTCGCCAAAGTTACGCGAAATTTTGGCCCTGGCGGCCCGCTTGGCCCAACAAATGGGGGCAAGACG TGTGGGTACTGAGCACCTATTGTTGGCCCTGTTGTCAGATGAGACCATCCTTTCCTCGCGGATCCTTTTGAACTTGGACG TGGAACCAAAGCAAGCCCGCCGGATGTTGTTACGGCGTTTGGGGGTTTCTCAAGAGGGACGGCGCAACCGCCGGCAAAAC CAATCCAATACCCAACCGGAGGAGGGGGAAGGGACTACGCCAACCCTTGATAAGTACGGCCGTGATTTGACAAAGGTGGC CAGGGAAGAAGGGCTTGACCCCGTAATTGGACGGGAAAAAGAAATCAAGCGGGCGATTCAGATCCTCGCCCGGCGGGCCA AGAATAACCCGGTCCTGTTAGGGGAACCGGGGGTCGGAAAGACGGCGATTGTCGAGGGCCTTGCCCAACGGATAGTTAAC GGTGAAGTTCCTGATGAACTAGCCGAAAAGCGCTTGGTGGTCCTGGATATGGGGACCTTGGTTGCCGGTACCAAATTCAG GGGTGAATTCGAGGGGCGGATCAAAAACGTCATCGATGAAGTTTACCGGGACGGCAAAATTATCTTATTTATCGACGAAA TCCACACCATGATTGGTGCCGGGGGAGCAGAGGGGGCGATTGACGCCTCCAACATTCTCAAACCGGCCCTGGCCCGGGGG GAACTCCAGCTGATTGGGGCGACTACCCTGGACGAGTACCAAAAGTACGTTGAAACCGATGCGGCCTTAGAACGGCGTTT TGCGACGATCATGGTTGAAGAGCCAACTAAGGAGCAGACCCGCCAAATCCTCGAGGGAATTCGGCCCCGCTATGAAAAAC ACCACCACGCCAAGATTACTGATGAAGCGCTGATGGCGGCGGTTAACTTGTCGAGTCGTTACATTACCAACCGTTTCTTA CCGGATAAGGCGATTGACCTGATCGATGAGGCCGGGGCAATGGTCCGCATCGATGGTGAAGAAAAGGGGAACCAAAAGAA TGGCTTGACGGTCAAGTTAGAGGAACTCCGGGCACAAAAAGAGGACGCAATTGCCGAGCAAGACTTTGACCGGGCGGCCG ACTTACGCCACGAAGAGCTAACGGTTAAGCGACAAATCGAAGAACAGCGGGAACGAGACGCCCAGTTGGTTGCCGATGGC AAGTTCCTGTACACCGTGACGGCTGAAGACATTGCCAAGGTAGTTAACGAATGGACCGGGGTGCCGTTAACCCAACTCCA AAAGAAGGAAAGCGATCGCTTGGTTAACCTGGAGAGGGTGCTTCACAAACGAGTGATCGGCCAAGACGAAGCCGTTTCGG CGATTGCCCGGGCAATTCGCCGGGCCCGCAGCGGCTTAAAGGACCCAAACCGGCCGATTGGTTCCTTCATGTTCTTAGGA CCAACCGGGGTTGGGAAGACCGAGCTGGCTAAGGCGTTAGCCGAAGCGATGTTTGGCCAAGAAGACAACATGATCCGGAT TGATATGTCCGAGTACATGGAACGCTATTCGACCAGCCGGTTAGTCGGGGCGGCGCCAGGTTACGTCGGCTACGACGAAG GTGGACAGTTGACCGAACAGGTTCGCCAACACCCGTACTCCGTCGTCTTATTAGATGAGGTGGAAAAGGCCCACCCAGAT GTCTTTAACCTCCTGTTACAGGTCTTAGATGATGGGGTTTTGACCGATTCCAAGGGACGTAAGGTTGACTTCCGGAACAC GATTTTGATAATGACCTCCAACTTGGGGGCGACCCAGTTGGCCGATGAAAAGACGGTCGGCTTCGGGGCGACTGGCGTTC AAAATAATTACCAAGCGATGTCGGCGGCCATCAAGCAACAGATGCGCTTGCACTTCCGGCCGGAGTTCTTGAACCGGATT GATGAGACCGTGATCTTCCACTCGTTGACCAAGGAAAATATTCACCAAGTGGTTAAGCTCTTGAGCGCCCAGTTGGTAAA GCGGGTGGCGGAACAAAAGATCAGCCTGAAACTGACCCCGGCTGCCATTGAGTTAGTAGCGGCGAAGGGGTACAACCCTG AATACGGGGCGCGGCCATTACGGCGGGCCTTACAAACGATGGTGGAAGACCCGCTCTCCTTATCGATGATTGATGGCCAA GTTGCGGCCGGTGATCAAGTGACGATTGGTGCCCAACGGGGGAAATTGAGCTTCAAAGTCAAAACTTCTGACAACGCTTC CCGGAACCTAGTTCTCCAAAATTAA Protein sequence : MDNENLYTPSANNVLRIAQEQARFFKHQAVGTEHLLLALSLEKVGVAATVLHQFNVTSDDLREEIERYTGYGTMQNTASD AYLPNSPKLREILALAARLAQQMGARRVGTEHLLLALLSDETILSSRILLNLDVEPKQARRMLLRRLGVSQEGRRNRRQN QSNTQPEEGEGTTPTLDKYGRDLTKVAREEGLDPVIGREKEIKRAIQILARRAKNNPVLLGEPGVGKTAIVEGLAQRIVN GEVPDELAEKRLVVLDMGTLVAGTKFRGEFEGRIKNVIDEVYRDGKIILFIDEIHTMIGAGGAEGAIDASNILKPALARG ELQLIGATTLDEYQKYVETDAALERRFATIMVEEPTKEQTRQILEGIRPRYEKHHHAKITDEALMAAVNLSSRYITNRFL PDKAIDLIDEAGAMVRIDGEEKGNQKNGLTVKLEELRAQKEDAIAEQDFDRAADLRHEELTVKRQIEEQRERDAQLVADG KFLYTVTAEDIAKVVNEWTGVPLTQLQKKESDRLVNLERVLHKRVIGQDEAVSAIARAIRRARSGLKDPNRPIGSFMFLG PTGVGKTELAKALAEAMFGQEDNMIRIDMSEYMERYSTSRLVGAAPGYVGYDEGGQLTEQVRQHPYSVVLLDEVEKAHPD VFNLLLQVLDDGVLTDSKGRKVDFRNTILIMTSNLGATQLADEKTVGFGATGVQNNYQAMSAAIKQQMRLHFRPEFLNRI DETVIFHSLTKENIHQVVKLLSAQLVKRVAEQKISLKLTPAAIELVAAKGYNPEYGARPLRRALQTMVEDPLSLSMIDGQ VAAGDQVTIGAQRGKLSFKVKTSDNASRNLVLQN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 6e-177 | 49 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| LC40_0963 | YP_005849030.1 | ATP-dependent Clp protease ATP-binding subunit | VFG0079 | Protein | 0.0 | 55 |
| LC40_0963 | YP_005849030.1 | ATP-dependent Clp protease ATP-binding subunit | VFG0080 | Protein | 9e-143 | 50 |
