Gene Information

Name : LC40_0620 (LC40_0620)
Accession : YP_005848727.1
Strain : Lactobacillus fermentum CECT 5716
Genome accession: NC_017465
Putative virulence/resistance : Resistance
Product : ABC superfamily ATP binding cassette transporter ABC protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1102089 - 1102856 bp
Length : 768 bp
Strand : -
Note : -

DNA sequence : 
ATGAACCAACCCGAAATTGAATTTGAACACGTCGTTAAGCGCTTTGGTCAAACAACGGTCATTCCGGACCTGTCCTTTAC
CATTAACAAGGGGGAGTTCGTGACCGTGCTGGGGGCATCTGGCTCGGGGAAGACGACGACCCTCAAAATGATCAACGGTC
TTTGGCAACCGACCAGCGGCACGGTTAAGATCGGTGGTAAAAAATTAACGGAGCACAACCAAGTGGACCTGCGGCGCCAC
YTCGGCTACGTGGTCCAACAGATTGCCCTCTTTCCCCACCTGACAATCAAGCAAAACATCGCCGTTGTTCCTAAGCTGTT
GGGGTGGGAGCAAGCTAAAATTGACCAGCGAGTTGACGAACTATTGGACCTAGTCAAACTTCCCAGCGACCAGTACGCTG
ATCGCTACCCCGCCCAGTTATCCGGGGGGCAGCAGCAACGCGTCGGCCTCGCCCGCGCCCTGGCCGCCAACCCCGATTTC
ATCCTCTTTGACGAACCGCTCGGCGCCCTAGATGCCTTAACCCGGATTGATTTGCAAAAGGAAATCAAAAACCTCCACGC
TTCGCTTGCCGATAAGACCTTTTTCTTTGTTACCCACGACATTAACGAGGCGCTTTATTTGGGGCAGCGGGTCATGGTGA
TGAACAGGGGACGCCTCGAACAGTTTGCCAGCCCGGAAACGATCGTCCAACACCCGGCGAGCCCCTTTGTTGAAGAGCTA
CTGGCAACCGAGGAGCGTAACCAGGAACTCTGGAGGCGACTGCAATGA

Protein sequence : 
MNQPEIEFEHVVKRFGQTTVIPDLSFTINKGEFVTVLGASGSGKTTTLKMINGLWQPTSGTVKIGGKKLTEHNQVDLRRH
XGYVVQQIALFPHLTIKQNIAVVPKLLGWEQAKIDQRVDELLDLVKLPSDQYADRYPAQLSGGQQQRVGLARALAANPDF
ILFDEPLGALDALTRIDLQKEIKNLHASLADKTFFFVTHDINEALYLGQRVMVMNRGRLEQFASPETIVQHPASPFVEEL
LATEERNQELWRRLQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
opuBA NP_938494.1 choline transport system ATP-binding protein Not tested Not named Protein 5e-48 47
opuBA YP_005124363.1 choline transport system ATP-binding protein Not tested Not named Protein 2e-48 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LC40_0620 YP_005848727.1 ABC superfamily ATP binding cassette transporter ABC protein BAC0600 Protein 4e-24 41