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Name : LC40_0023 (LC40_0023) Accession : YP_005848197.1 Strain : Lactobacillus fermentum CECT 5716 Genome accession: NC_017465 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease ATP-binding subunit Function : - COG functional category : - COG ID : - EC number : - Position : 36811 - 38904 bp Length : 2094 bp Strand : + Note : - DNA sequence : ATGGCACGAATTCCAGTAGATCCATTTAACAACGACATGGACGACTTATTTAACCAACTCATGGGGGGAATGAACGGGTT CAACAGCGACAACCGCCGTTACCTGATTAACGGGCGCGAAGTAACGCCTGAAGAGTACGCCGCCTTTCGCCAGACCGGGA AGCTCCCGGGTGCAACTGACCCAACCCAAGCAAAAACTAAGCAACCACAACCAGACAGCATGCTAGCTAAGCTCGGCCGC AACTTGACGCAAGAAGCCAAGGAAGGCAAGCTCGACCCGGTGATCGGCCGTAACAAGGAGATTCAAGAAACCGCCGAGAT TCTGTCACGGCGGACCAAGAACAACCCAGTGTTAGTCGGTGACGCCGGGGTCGGCAAGACGGCGGTGGTGGAGGGCCTAG CCCAAGCCATCGTGGCCGGCGACGTTCCCGCTGCCATCAAGAACAAGCAGATTATTTCGATTGACATTTCCAGCTTGGAG GCCGGGACCCAATACCGGGGCTCCTTTGAAGAGAACATGCAAAAGCTGATCGACGAGGTCAAAAAGGACGGCAACGTGAT CCTCTTCTTCGATGAAATTCACCAAATCATCGGGGCCGGAAACGCCGGCGACGCCTCGGGTTCCAAGGGGATGGCCGATA TCTTAAAGCCGGCCCTTTCCCGCGGTGAAGTGACCTTAATCGGGGCCACCACCCAAGACGAGTACCGTAACACGATTTTA AAGGACGCCGCTTTATCTCGGCGGTTCAACCAAGTAACGGTTAACGCCCCGAGCAAGGAAGACACTTTCAAGATCCTGCA AGGTTTGCGTAAGCTGTACGAAAAGCACCACAACGTTTCCTTGCCCGACGACGTCTTAAAGGCCGCCATCGATTACTCGG TTCAATACATTCCGCAACGCTCCTTACCTGACAAGGCGATCGACTTGATTGACGTCACGGCCGCTCACCTGGCCTCCAAG CACCCGGTCAAGGACGCCAAGACGATTGAAGAGGAGATCAAAAAGGCCGAGGCCAAGCAACAAGAAGCGGTTGAAAAAGA GGATTACCAAGCCGCCCAAGAGGCCAAGGACCAGGTGGCCAAGTTGCAAGACCAACTCAAGGACCACTCCGAATCCGAAC GGGTCGTGGCAACGCCGAGTGACGTGGCCGCCGCCGTTGAACGGATGACCGGGATCCCGGTGTCCAAGATGGGTGCTTCC GATATCGAACGCTTAAAGGGCTTAGCCACCCGTTTGGAAGGCAAGGTTATCGGCCAACAAGAGGCCGTCGAAGCCGTGAG CCGGGCGATCCGGCGTAACCGGGCCGGCTTTGATGAAGGTAACCGGCCAATTGGGAGCTTCCTTTTCGTCGGCCCAACCG GGGTCGGTAAGACCGAATTGGCTAAGCAACTAGCCCTCGATATGTTTGGTTCCACCAACGACATCATCCGGCTCGACATG TCCGAATACACCGACCGGACGGCGGTTTCCAAGTTGATCGGGACCACCGCTGGCTACGTGGGTTACGACGATAACTCCAA CACCCTGACCGAAAAGGTAAGGCGTCACCCGTACTCGATCGTCTTGCTCGACGAAATCGAAAAGGCCAACCCGCAAGTCA TCACCTTGCTCTTGCAAGTCTTAGATGATGGGCGCCTAACCGATGGGCAAGGGAACACGGTGGACTTCAAGAACACCATC ATCATCGCCACCTCTAACGCCGGCTTCAGTAGCGACGCCGTGGCGGGCGAGGACGCTAAGTTGATGGACAAGTTGCAACC GTACTTCCGGCCAGAATTCCTGAACCGGTTTGACGCAATCGTGGAATTCCACACCCTGACCAAGGACGACTTAAAGCAAA TCGTCGACCTGATGTTAGCCGGGGTTAACGAAACCTTGGCCAAGAAGGGGATGGACGTCACGGTGACCGATGAAGTGAAG AACTACCTGATTGACAAGGGCTATGACAAGACGATGGGGGCCCGGCCACTGCGGCGGGTGGTGGAACAAGAGATCCGTGA CAAGGTGACGGATTACTACCTCGACCACCTGGACGAAAAGCACCTCGTGGCCACCTTAAAGGACGGCCAAGTCGTGATTG AACAAGCAAAGTAA Protein sequence : MARIPVDPFNNDMDDLFNQLMGGMNGFNSDNRRYLINGREVTPEEYAAFRQTGKLPGATDPTQAKTKQPQPDSMLAKLGR NLTQEAKEGKLDPVIGRNKEIQETAEILSRRTKNNPVLVGDAGVGKTAVVEGLAQAIVAGDVPAAIKNKQIISIDISSLE AGTQYRGSFEENMQKLIDEVKKDGNVILFFDEIHQIIGAGNAGDASGSKGMADILKPALSRGEVTLIGATTQDEYRNTIL KDAALSRRFNQVTVNAPSKEDTFKILQGLRKLYEKHHNVSLPDDVLKAAIDYSVQYIPQRSLPDKAIDLIDVTAAHLASK HPVKDAKTIEEEIKKAEAKQQEAVEKEDYQAAQEAKDQVAKLQDQLKDHSESERVVATPSDVAAAVERMTGIPVSKMGAS DIERLKGLATRLEGKVIGQQEAVEAVSRAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLALDMFGSTNDIIRLDM SEYTDRTAVSKLIGTTAGYVGYDDNSNTLTEKVRRHPYSIVLLDEIEKANPQVITLLLQVLDDGRLTDGQGNTVDFKNTI IIATSNAGFSSDAVAGEDAKLMDKLQPYFRPEFLNRFDAIVEFHTLTKDDLKQIVDLMLAGVNETLAKKGMDVTVTDEVK NYLIDKGYDKTMGARPLRRVVEQEIRDKVTDYYLDHLDEKHLVATLKDGQVVIEQAK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 1e-132 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| LC40_0023 | YP_005848197.1 | ATP-dependent Clp protease ATP-binding subunit | VFG0080 | Protein | 7e-153 | 51 |
| LC40_0023 | YP_005848197.1 | ATP-dependent Clp protease ATP-binding subunit | VFG0079 | Protein | 1e-136 | 46 |
