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Name : clpC (HMPREF9231_0891) Accession : YP_005838223.1 Strain : Gardnerella vaginalis HMP9231 Genome accession: NC_017456 Putative virulence/resistance : Virulence Product : negative regulator of genetic competence ClpC/MecB Function : - COG functional category : - COG ID : - EC number : - Position : 1064656 - 1067145 bp Length : 2490 bp Strand : - Note : - DNA sequence : ATGTTTGAACGGTTCACTGACCGCGCTCGGCGTGTGATTGTGCTAGCTCAGGAAGAAGCGCGCTCTCTTCAGCATAACTA TATTGGTACCGAGCATATTCTCTTAGGTCTTATTAGAGAAGGCGAAGGAATAGCAGCAAAAGCTTTAAACGCCAAAGGCG TAGAATTAGACAATACTCGTAAACAAATAAAAGAAATGATTGGCACTGGTACTGTCTCGCCTAGTGGACACATACCTTTT ACTCCGCATGCTAAACAAGTGCTTGAGCTTAGTTTGCGTGAAGCATTGCAATTGGGGCACAGCTATATTGGTACCGAGCA TATTCTCTTAGGTCTTATTAGAGAAGGCGAAGGTGTTGGAACGCAGGTGCTTATTAAGATGGAGGTCGATTTAGGAGATC TTCGTAGCACTGCAATGGATTTGATTCGAGGAAATTCTGGATTACCAGAAGACGGTCAGAAGGGTGATTTGGCTAATGCT GGAGGAGTGCAGGATAAGAGGAATCAGTCTGGTTCTGCGCTGCTAGATCAGTTCGGAAGGAATCTTACTACAGAAGCTGA GCAAGGGAAGCTTGATCCTGTTATTGGTCGTTCAAAAGAGATTGAGCGCGTTATGGTTGTGCTTTCTCGCAGAACTAAGA ATAATCCTGTTCTTATAGGTGAACCTGGTGTTGGTAAAACAGCTGTTGTAGAAGGTCTTGCACAGAAGATTGTTGCTGGA GATGTGCCAGAAACGTTAAAGGGCAAGCAGGTTTATTCTCTTGACTTGGGTTCGATGGTTGCTGGATCTCGTTATCGTGG CGATTTTGAAGAGCGCTTAAAGAAGGTGCTTAAAGAAATTAAGACTCGTGGAGATATAGTTCTATTTATTGATGAGATTC ATACTATTGTTGGTGCTGGGTCTGCAGATGGTGCTTTGGGTGCTTCTGACATGCTTAAACCTATGCTTGCGCGTGGTGAG CTACAGACGATTGGTGCTACAACTACCGATGAGTATAGAAAGTATATTGAAAAGGATGCGGCTTTGGAACGAAGATTCCA GCCTATTCAAGTTCAAGAGCCTTCTATTGCAGAGACAATTGAGATTCTGAAAGGTTTGCGTGCGCGCTACGAGAATCATC ATCACGTAACTATTACGGATGCTGCTTTGCAGTCTGCAGCAGAAATGTCTGCTCGCTATATTCAAGATAGGAATTTGCCA GATAAGGCGATTGATCTTATTGATGAAGCTGGAGCTCGCCTACGTATTAAGCGATTGACAGAGCCACCAGAGCTTAAGGA ACTTGATTCTAAGATTTCTAAACTTTCAGAAAAGAAAGATGAAGCTATTAAGAATCAGGACTTTGAGAAGGCTGCCGACT TGCGAGATGAGCAGGAAAAGCTTGAGGAAGAACGTAAGAATAAAGAGCAGGCTTGGCGTGAGGGCGAGTCTAATGTGAAT ATGGTTGTAGACGAGGATGTTATTGCATCTGTTGTTTCTAATACAACTGGTATTCCTGTTGTTAAGCTAACTCAAGCGGA ATCCAAAAAGTTGCTCGGTATGGAAGCGGAGCTTCATAAGCGTATTATTGGTCAAGATGAGGCTGTTTCTGCACTTTCTC GTTCTATTCGTCGTGCGCGAGTAGGATTGAAAGATCCAAAGCGTCCTTCTGGATCGTTTATTTTCGCTGGTCCTACAGGA GTTGGTAAGACAGAGCTTGCGAAAACCTTAGCTCAATTCCTGTTCGACGATGATGATGCTTTGATTCGTGTTGATATGTC GGAGTTTGCGGAAAAGTATGCGGCTTCTCGTCTTTTCGGTGCTCCTCCAGGATATGTTGGCTACGAGGAGGGTGGCGAGC TTACAGAGAAGGTTCGTAGAAAGCCATTCTCGGTGGTGCTTTTTGACGAAATTGAAAAGGCTCATCCAGATATTTTCAAC ACGCTTTTGCAAGTGTTAGACGACGGTCATTTAACAGATGGCCAGGGAAGAAAAGTTGATTTTAAGAACACGATTATTAT CTTGACTACAAATCTTGGTACTCGTGATATTGCTAAGTCAGCGAATACTGGTTTTAGTCTTGGCAATAATGCGGATGCAT CTTACCAGAGGATGAAGGATCAGGTTAATTCGGAATTGAAGCGTCAGTTCCGTCCGGAATTCCTAAACCGTTTGGATGAT ACGATTGTGTTCCGTCAGCTTACTGAGCCAGAGGTTCGTCAGATTGTTGATTTGGACGTTAAGCATTTGAATGACCGTCT GTTTGAACGTCATATGACTTTGGAGCTTACAGATGCAGCTAAGAATCTTCTTGCGCAAAAGGGCTTTGATCCTCTTCTTG GAGCAAGACCGTTGCGAAGAGTTATTCAGCGCGATATTGAGGATGCCATAAGTGAGAAGATTTTGCTTGGCGACTTAACA GATGGTGAACGCGTTGAAGTTGATGCAGAAGGCGAAGGTTTGCTGGGGGAGTTTATTTTCCGCGGCATAAAGTTTGATGT TGAGTCTTGA Protein sequence : MFERFTDRARRVIVLAQEEARSLQHNYIGTEHILLGLIREGEGIAAKALNAKGVELDNTRKQIKEMIGTGTVSPSGHIPF TPHAKQVLELSLREALQLGHSYIGTEHILLGLIREGEGVGTQVLIKMEVDLGDLRSTAMDLIRGNSGLPEDGQKGDLANA GGVQDKRNQSGSALLDQFGRNLTTEAEQGKLDPVIGRSKEIERVMVVLSRRTKNNPVLIGEPGVGKTAVVEGLAQKIVAG DVPETLKGKQVYSLDLGSMVAGSRYRGDFEERLKKVLKEIKTRGDIVLFIDEIHTIVGAGSADGALGASDMLKPMLARGE LQTIGATTTDEYRKYIEKDAALERRFQPIQVQEPSIAETIEILKGLRARYENHHHVTITDAALQSAAEMSARYIQDRNLP DKAIDLIDEAGARLRIKRLTEPPELKELDSKISKLSEKKDEAIKNQDFEKAADLRDEQEKLEEERKNKEQAWREGESNVN MVVDEDVIASVVSNTTGIPVVKLTQAESKKLLGMEAELHKRIIGQDEAVSALSRSIRRARVGLKDPKRPSGSFIFAGPTG VGKTELAKTLAQFLFDDDDALIRVDMSEFAEKYAASRLFGAPPGYVGYEEGGELTEKVRRKPFSVVLFDEIEKAHPDIFN TLLQVLDDGHLTDGQGRKVDFKNTIIILTTNLGTRDIAKSANTGFSLGNNADASYQRMKDQVNSELKRQFRPEFLNRLDD TIVFRQLTEPEVRQIVDLDVKHLNDRLFERHMTLELTDAAKNLLAQKGFDPLLGARPLRRVIQRDIEDAISEKILLGDLT DGERVEVDAEGEGLLGEFIFRGIKFDVES |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 67 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_005838223.1 | negative regulator of genetic competence ClpC/MecB | VFG0079 | Protein | 0.0 | 56 |
| clpC | YP_005838223.1 | negative regulator of genetic competence ClpC/MecB | VFG0080 | Protein | 5e-143 | 51 |
