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Name : tkt (HMPREF9231_0780) Accession : YP_005838122.1 Strain : Gardnerella vaginalis HMP9231 Genome accession: NC_017456 Putative virulence/resistance : Unknown Product : transketolase Function : - COG functional category : - COG ID : - EC number : 2.2.1.1 Position : 932928 - 935027 bp Length : 2100 bp Strand : + Note : - DNA sequence : ATGACCGAATTCAACTGGTCTGCATTAGACGAGCGCGCCGTAAAGATGGCGAAGGTTCTCTCGGCTGATGCTGTTGAGCG AGCAGGACACGGACATCCTGGCTCCCCTGTTTCATTGGCACCGATTGCGTACACCTTGTACCAGCACTTCATTAAGCACG ATCCAGCTGACCCAAAGTGGGCCGGTCGCGATCGTTTTATTCTTTCTGGCGGCCACGCTTCGCTTACGCAATATGTGCAG CTGTTCTTCTCTGGATACGGCTTGACTCTTGATGATCTCAAGTATTTCCGTGGCGGCGCAGACACGCGTACTCCAGGTCA CCCAGAATATGGCTTAACTCCAGGCATTGAAATGACCACTGGTCCTCTTGGACAGGGTCTTGCTTCTGCTGTTGGTTTCG CTTATGGTCAGCGTTTTGAGCGTGGTCTTCTTGATCCAGAAGCTCCAGCTGGCACTTCCCCATTCGATCACAATGTTTGG GTTATCTGTGGCGAAGGCGACGTTGAGGAAGGCGTTTCTTCCGAGGCTGCTTCCTTGGCTGGAAACCAAAAGCTTGGTAA TTTGACTGTAATCTTCGATGCAAACCACATTCAGATCGAAGGCGACACTAAGCTCACCTTCTCCGAGGATATTCTTGCTC GTTACCGTGCATACGGTTGGTACACCGATGAAGTTAGCTTCATTCAGCCAGACGGCTCCTACAAGGAAGACGTTCAGGCT TTGGCTGCAGCTATCGAAAAGGCTCAGGAAGTTACCGATAAGCCTCACTTCATTAAGGTTAATACTTTGATTGCTTGGCC AACCCCAGGCAAGACCAACAATGAAGCTTCTCACGGCTCTAAGCTTGGTGAAGAAGCTGTTAAGGGCTTGAAGGAACTTT GCGGTTTCGACCCAGAAGTTTCGTTCCCAATCGACGAAGAAGCTTTGGCTCATGCTCGTAAGGTTGCTGAACGCGGTTTG GCTGCTCACAAGGCTTGGGATGAAGCTCTTGCAAAGTGGGCTGCTCAAAACCCAGATAAGGCTGCTCTCTACGAGCGCCT TAAGGCTGGCAAGCTTCCTGAAGGCTTCGACAAGGCTATTGACGACTTGGTTGCTGGCTTCGAAGTCGGTTCCAAGGTGG CTACCCGTAAGGCTTCTGGCGCAGTTCTTAACGCAATTGCTGCTGTTATGCCAGAACTTTGGGGCGGCTCCGCTGATTTG GGCGGCTCCAACAACACCAACATTAAGGGCGCTGACTCCTTCGGTCCATCCGAGGATGCAACTCGTACTTGGCCAAACGT TTCCGAGTACGGCCGCCAGCTTCACTTCGGTGTGCGCGAGTTCGCAATGGGTGCTATTACCAACGGTATTTTGCTTGGTT CTGACACTCGCCCATTCAACGGCACATTCTTCCAGTTCTCTGACTACGAGCGCCCAGCAGTTCGCTTGGCTGCTTTGATG GAGATTCCAAACCTCTACGTTTGGACTCACGACTCCGTAGCCTTGGGCGAAGATGGTCCAACTCACCAGCCAATCGAGCA CTTGGCTGCTTTCCGTGCTATTCCTCAGCTTGAGGTTGTACGCCCTGCAGATGAGTATGAGACTGCTGAAGCTTACCGCT ACTTCTTCGAGAAGAAGAACAACTACCCAACCGCTATGATTTTGACACGTCAGGGCGTACCAACCCTCGCAGAAACTGCT GAGAAGGCTCACGAAGGCGTAAAGCACGGCGGTTATGTGTTGGTTGACTGCGAAGGCACTCCAGACGTAATCATCATGGC TACTGGTTCTGAAGTTCAGTGGGCTGTTGCTGGCGCCAAGACTTTGGCAGCAGAAGGCATTAAGGCTCGCGTTCTTTCTA TGCCATCTCTCGAGTGGTTCGAAGAGCAAGACGAAGAGTACAAGGAAGCAATCCTTCCAAAGTCCGTCAAGGCTCGCGTT TCCATCGAAGCTGGCTTGGCATTGCCTTGGTACAAGTATCTTGGCGATTGCGGCAAGGCTGTTTCTATCGAACAGTACGG CTTGCAGGGTGACGGCGGTCAGAACATGATCGACTTGGGCATTACTGCTGAGCACGTAGTAGAAGCTGCTAAGGCTTCTA TCGAAGAAGCACGCGCTTAA Protein sequence : MTEFNWSALDERAVKMAKVLSADAVERAGHGHPGSPVSLAPIAYTLYQHFIKHDPADPKWAGRDRFILSGGHASLTQYVQ LFFSGYGLTLDDLKYFRGGADTRTPGHPEYGLTPGIEMTTGPLGQGLASAVGFAYGQRFERGLLDPEAPAGTSPFDHNVW VICGEGDVEEGVSSEAASLAGNQKLGNLTVIFDANHIQIEGDTKLTFSEDILARYRAYGWYTDEVSFIQPDGSYKEDVQA LAAAIEKAQEVTDKPHFIKVNTLIAWPTPGKTNNEASHGSKLGEEAVKGLKELCGFDPEVSFPIDEEALAHARKVAERGL AAHKAWDEALAKWAAQNPDKAALYERLKAGKLPEGFDKAIDDLVAGFEVGSKVATRKASGAVLNAIAAVMPELWGGSADL GGSNNTNIKGADSFGPSEDATRTWPNVSEYGRQLHFGVREFAMGAITNGILLGSDTRPFNGTFFQFSDYERPAVRLAALM EIPNLYVWTHDSVALGEDGPTHQPIEHLAAFRAIPQLEVVRPADEYETAEAYRYFFEKKNNYPTAMILTRQGVPTLAETA EKAHEGVKHGGYVLVDCEGTPDVIIMATGSEVQWAVAGAKTLAAEGIKARVLSMPSLEWFEEQDEEYKEAILPKSVKARV SIEAGLALPWYKYLGDCGKAVSIEQYGLQGDGGQNMIDLGITAEHVVEAAKASIEEARA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tktA | AAO17218.1 | TktA | Not tested | tcd island | Protein | 1e-105 | 42 |
| APECO1_2641 | YP_859417.1 | transketolase | Not tested | Not named | Protein | 8e-105 | 41 |
