Gene Information

Name : HMPREF9231_0455 (HMPREF9231_0455)
Accession : YP_005837814.1
Strain : Gardnerella vaginalis HMP9231
Genome accession: NC_017456
Putative virulence/resistance : Unknown
Product : putative oligopeptide ABC transporter, permease protein OppC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 559522 - 560511 bp
Length : 990 bp
Strand : +
Note : -

DNA sequence :
ATGGAAGATAATTTGATGGAAGATAATTTGATTACAAATAATGCAAATTACAACACATTGCCAGGTCAGGAACGCTATGT
TGCTCCTCTTGACGATACGCCTCTTCAAGAAGTTGATTCTGTAGACGAATCTGCTCCAGCTACAAGCATGTGGGCTGATG
CTTGGAGATCTTTGCGCAGAAATCCATTGTTTATTGTTTCTGCAATTTTGATTATTGCAATTATTTTTGTTGCGCTCTTC
CCAGGCGCTCTCACAAAGCACAATCCTAATTACTGTGTTTTGGAGCATTCGCTTGAGCCAGCTTCTGCTGCACATCCGTT
TGGATTCGACATGCAAGGATGCGATATTTACGCTCGAGTTGTATATGGAACACGTACATCTTTAAGCGTTGGCTTGCTCG
CAACGGCTTTAGTGGTGTTAGTTGGTTCGCTAATTGGAGCTTTGGCTGGATTCTTTGGCGGATGGATTGATGCGGTTCTT
AGCCGAATCACCGATATCTTCCTGGCTCTACCAATGCTGTTGGGTGCAATCGTAGTTTTGCAAATGTTCCGCACATCTAA
GTCGATTTGGAAAATCGTGTTTGTTATGGTTCTCTTTGGATGGGTAGGCGTTGCTCGAATCGCAAGAAGTGCCGTTATGG
AATCCAAGAATCTTGAGTTTAATACGGCTTCTACAGCTTTAGGTTCAACTCCAATGCGTAATCTTTTCTGTCATATTATT
CCAAACTCGCTGGCCCCAATCATTGTTGTAGGAACAACATCCCTTGGTTCTTACATTGTTTTGGAAGCAACACTTAGCTT
CCTTGGTATTGGTTTGCCAACTACGACCGTTAGCTGGGGTGTAGATATTTCTACCGCTAGGAATGTTCTTACTACAAATC
CAGAAGTTTTGTTCTATCCGTCTATTGCGCTCGCTATTACTGTTCTCGCCTTTATTATGATGGGCGACGCCGTAAAAGAT
GCGTTGGATCCAAAGAGCCGTAAGGCGTAA

Protein sequence :
MEDNLMEDNLITNNANYNTLPGQERYVAPLDDTPLQEVDSVDESAPATSMWADAWRSLRRNPLFIVSAILIIAIIFVALF
PGALTKHNPNYCVLEHSLEPASAAHPFGFDMQGCDIYARVVYGTRTSLSVGLLATALVVLVGSLIGALAGFFGGWIDAVL
SRITDIFLALPMLLGAIVVLQMFRTSKSIWKIVFVMVLFGWVGVARIARSAVMESKNLEFNTASTALGSTPMRNLFCHII
PNSLAPIIVVGTTSLGSYIVLEATLSFLGIGLPTTTVSWGVDISTARNVLTTNPEVLFYPSIALAITVLAFIMMGDAVKD
ALDPKSRKA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
dppC YP_005160016.1 putative peptide transport system membrane protein Not tested Not named Protein 6e-74 57