Gene Information

Name : HMPREF9231_0292 (HMPREF9231_0292)
Accession : YP_005837661.1
Strain : Gardnerella vaginalis HMP9231
Genome accession: NC_017456
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 324305 - 325048 bp
Length : 744 bp
Strand : +
Note : -

DNA sequence : 
ATGACAAAAGTTTTACTAGCTGGAGAATCTTGGATTTCATCTACTACAGAATATAAAGGTTTTGATGAATTTACATCCAC
TAAATTAGAAATTGGTTGCGTGGAATTTCTTGATGCTCTTAGAAAGTTTGGTCACGATGTTACACATCTAAAAGCTCATG
ATGTTCCAGAAAACTTTCCATGGACAATGGATGAATTAAACAAATACGATGTTGTGATACTTTCAGATATAGGAAGTAAT
TCATTTTTACTACCTAATAGGGTATTTGGTGAAGGAAAAATATGCGTAAATCGTTTAGATTTATTAGCTAAATGGGTTCG
TGAAGGTCATGGACTGATGATGGCAGGTGGATATCTTTCCTTTGCTGGATTTGAAGGTAAAGCTCATTATCATGGTACAT
CTATTGAAGATGTGCTTCCTGTTGAAATAAGTCCATTTGATGATAGAGCTGAAAAACCTCAAGGTGTAATTCCTAAAATA
GTATCCAATCATACAATTGTGAATGATTTGAGTCCTATTCCAATTCTTCTTGGATATCAAAAGCTTTTAGCTAAAGAAAG
TTCTAATATTCTCATGAAAGTTGATGATAATCCTTTGCTCATTGTTAATGAGGTAGATAAAGGCAGAAGTATTGCTTTTG
CATCAGATATAGCTCCTCATTGGGCTCCGGAAGCGTTTATGCAATGGAGTGGATATGGTCAACTATTTTCTAATTGTGTC
AAGTGGCTTTCTAAAGAAATTTAA

Protein sequence : 
MTKVLLAGESWISSTTEYKGFDEFTSTKLEIGCVEFLDALRKFGHDVTHLKAHDVPENFPWTMDELNKYDVVILSDIGSN
SFLLPNRVFGEGKICVNRLDLLAKWVREGHGLMMAGGYLSFAGFEGKAHYHGTSIEDVLPVEISPFDDRAEKPQGVIPKI
VSNHTIVNDLSPIPILLGYQKLLAKESSNILMKVDDNPLLIVNEVDKGRSIAFASDIAPHWAPEAFMQWSGYGQLFSNCV
KWLSKEI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SC1402 YP_216389.1 hypothetical protein Not tested SPI-2 Protein 2e-44 46
orf245 NP_460346.1 hypothetical protein Not tested SPI-2 Protein 2e-44 46
ORF 245 CAB37418.1 - Not tested SPI-2 Protein 1e-44 46
STY1741 NP_456145.1 Orf 245 protein Not tested SPI-2 Protein 2e-44 46
t1249 NP_805053.1 hypothetical protein Not tested SPI-2 Protein 2e-44 46
APECO1_1077 YP_853097.1 hypothetical protein Not tested PAI IV APEC-O1 Protein 4e-44 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF9231_0292 YP_005837661.1 hypothetical protein VFG0482 Protein 7e-45 46