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Name : clpB (HMPREF9231_1358) Accession : YP_005838660.1 Strain : Gardnerella vaginalis HMP9231 Genome accession: NC_017456 Putative virulence/resistance : Virulence Product : ATP-dependent chaperone protein ClpB Function : - COG functional category : - COG ID : - EC number : - Position : 1658303 - 1660897 bp Length : 2595 bp Strand : - Note : - DNA sequence : ATGGAACAAAAGTTTACAACCTTAGCGCAAGATGCATTAAGCGATGCTGTGCAAAGCGCGGCGGCAGCTGGCAATGCGCA AGTAGATACGTTACATTTGGCAGATGCCTTACTTCGCCAAGAGCAAGGCGTAGTGCGCGCGCTTATTGCACAGGCAGGGG CGGACGCGCAACAAATCGGCGCTGAAATTCGCAACGCATTAGTGGCACTGCCTTCATCTACTGGCTCAACTACAACTAAG CCAGACGCAAGCCGTCAGCTTTTAGCTGCGCTAAGCCAGGCAGAAAAAGAAATGCGCACAATGGGAGACGAATACGTTTC TACAGAGCACATGCTTATTGGCATAGTTGCAAGCGCGCCGAATGCTGTTGCGGATATTTTCAAAAAGCACAATGTTTCTG CAGACGCGTTGCGCAAGGCTGTGCCAACTGTACGCGGAGGCGCGAAAGTTACAAGCCCAGACGCGGAAGGCAACTACAAA GCGCTCGAAAAATATTCGGTTGATATGACTGCGCGCGCTCGCGAAGGAAAGCTTGACCCTGTGATTGGGCGAGATCAGGA GATTCGCCGCGTGATTCAAATTCTTTCTCGCAGAACTAAGAACAATCCTGTGCTAATTGGCGAGCCAGGCGTTGGAAAAA CGGCAGTTGTAGAAGGATTGGCTCAGCGAATTGTGGCAGGAGATGTGCCTACGACTTTGCAAAACAAGCGTCTTATCAGC CTCGACTTGGCTTCGATGGTTGCAGGTTCGAAGTATCGCGGCGAGTTTGAGGAACGCTTAAAGGCAGTGTTGAAGGAAAT TCAGCAATCAGACGGTCAAATTATTACGTTTATTGATGAGATTCACACTGTTGTTGGCGCAGGATCTGCAGAAGGTTCAA TGGATGCTGGCAATATGCTTAAGCCAATGCTTGCGCGCGGTGAGCTGCGCTTGGTTGGCGCGACTACTCTTAATGAGTAT CGTGAGCATATTGAAAAGGATTCCGCTCTTGAGCGCAGATTCCAGCAAGTATTCGTTGGCGAGCCATCTGTTGAAGATAC GGTGACGATTTTGCGCGGACTTAAGCAACGTTACGAAGCGCATCATAAGGTGACGATTAGTGACGATGCAATCGTAGCTG CAGCAACGCTTTCAAACCGCTATATTACTGGCAGACAACTTCCAGATAAGGCGATTGATTTGGTTGATGAAGCGGCAGCT CACTTGCGTATGGAGCTTGATTCTCAGCCAGAAGAAATCGACGAATTGCAGCGCAAAGTTACGCGTCTTGAAATGGAAGA AATGCAATTAAAGAAAGCGGAAGATGCTGCTGCTAAAGAACGCTTAGAAAAGTTGCAAGAAGAATTAGCAAACTCGCGCG AAAAGCTTACTGGTTTGAAAGCGCGTTGGGATGCGGAAAAGGCTGGTCACAACAAGGTTGGTGATTTGCGAGCGCAACTC GATGCTAAGCGCGTAGAAGCCGACAAATTCACGCGTGAAGGCAATTTGGAGCAAGCAAGCCGTATTTTGTATGGCGAAAT CCCAAGCATTCAAAAAGCTTTGGAAGAAGCGGAATCACAGGCTGCTAATGCTAAGAGTGAAGCGAAAGAGCCAATGGTTC CAGACCAGGTTGATGCCGATTCTATTGCAGGAGTTGTTAGCGAATGGACGGGCATTCCTGTTGGTCGCTTAATGCAAGGC GAAAATGAGAAGCTGCTCAACATGGAAAAGGAGCTTTCTAAGCGCGTTGTTGGCCAAAGCGAAGCAATCCGCGCTATAGC GGATGCTGTGCGCAGAAGCCGTGCTGGAATTGCAGACCCGAATCGCCCAACTGGTTCGTTCCTATTCTTGGGTCCTACTG GCGTTGGTAAGACGGAGCTTGCAAAGGCTCTTGCCGACTTCTTGTTTGACGACGAGCGCGCAATGGTTCGCATTGATATG AGCGAGTACATGGAAAAGGCTTCCGTTTCACGGCTTATAGGTGCTGCTCCTGGTTACATTGGCTATGAGGAAGGCGGCCA GCTTACTGAAGCCGTGCGACGCCGCCCGTATTCTGTAGTGCTTTTTGACGAAATTGAGAAGGCACATCCAGAAGTATTCG ACGTTTTGTTGCAGGTTTTGGACGATGGTCGTTTGACTGACGGACAAGGTAGAACGGTTGATTTTACGAATACGATTTTG ATTATGACATCAAACTTGGGTTCGCAATTCCTTGTGCAAGAGGGCTTGGATGATGATGCTAAGCGCAAGGCTGTTATGAA CGCTGTTCACGCTGAGTTTAAGCCAGAGTTCATCAACCGTTTGGATGAGCTTGTTATGTTCCATCCGTTGAGCCGCGAAG AGCTTGGCGGAATTGTGGATATTCAAGTTCGTCAAGTGGCTGCACGCTTGAGTGATCGCCGTATTAGCTTGGATGTGAGT GATTCTGCTCGCGCTTGGCTTGCGGAGCATGGCTATGATCCAGTTTACGGTGCTCGTCCGTTGCGTAGATTGGTTCAAAC GGAAATTGGCGATCAACTTGCGCGATTGTTGCTTTCTGGCAAGGTGCATGATGGGGCTCGCGTAGTTGCGGATTGTGAGA ATACTAGCGACCATGTAACCCTAAAGATTGCGTAG Protein sequence : MEQKFTTLAQDALSDAVQSAAAAGNAQVDTLHLADALLRQEQGVVRALIAQAGADAQQIGAEIRNALVALPSSTGSTTTK PDASRQLLAALSQAEKEMRTMGDEYVSTEHMLIGIVASAPNAVADIFKKHNVSADALRKAVPTVRGGAKVTSPDAEGNYK ALEKYSVDMTARAREGKLDPVIGRDQEIRRVIQILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVAGDVPTTLQNKRLIS LDLASMVAGSKYRGEFEERLKAVLKEIQQSDGQIITFIDEIHTVVGAGSAEGSMDAGNMLKPMLARGELRLVGATTLNEY REHIEKDSALERRFQQVFVGEPSVEDTVTILRGLKQRYEAHHKVTISDDAIVAAATLSNRYITGRQLPDKAIDLVDEAAA HLRMELDSQPEEIDELQRKVTRLEMEEMQLKKAEDAAAKERLEKLQEELANSREKLTGLKARWDAEKAGHNKVGDLRAQL DAKRVEADKFTREGNLEQASRILYGEIPSIQKALEEAESQAANAKSEAKEPMVPDQVDADSIAGVVSEWTGIPVGRLMQG ENEKLLNMEKELSKRVVGQSEAIRAIADAVRRSRAGIADPNRPTGSFLFLGPTGVGKTELAKALADFLFDDERAMVRIDM SEYMEKASVSRLIGAAPGYIGYEEGGQLTEAVRRRPYSVVLFDEIEKAHPEVFDVLLQVLDDGRLTDGQGRTVDFTNTIL IMTSNLGSQFLVQEGLDDDAKRKAVMNAVHAEFKPEFINRLDELVMFHPLSREELGGIVDIQVRQVAARLSDRRISLDVS DSARAWLAEHGYDPVYGARPLRRLVQTEIGDQLARLLLSGKVHDGARVVADCENTSDHVTLKIA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 4e-159 | 47 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 1e-108 | 41 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 2e-108 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_005838660.1 | ATP-dependent chaperone protein ClpB | VFG2084 | Protein | 2e-111 | 44 |
| clpB | YP_005838660.1 | ATP-dependent chaperone protein ClpB | VFG2076 | Protein | 2e-119 | 44 |
