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Name : HMPREF9231_1348 (HMPREF9231_1348) Accession : YP_005838650.1 Strain : Gardnerella vaginalis HMP9231 Genome accession: NC_017456 Putative virulence/resistance : Virulence Product : thiol-activated cytolysin Function : - COG functional category : - COG ID : - EC number : - Position : 1647709 - 1649259 bp Length : 1551 bp Strand : + Note : - DNA sequence : ATGAAGAGTACAAAGTTCTACCGTAATGCAGCAATGTTGCTCCTCGCGGGCGCAACTATTGTTCCACAATGCTTAGCAGC ACCAGCAATGGCCGCTCCTTCCGCTAAGGATTCTGAACCAGCTACATCTTGCGCAGCTAAGAAAGACTCGTTGAATAATT ATTTGTGGGATTTGCAATACGATAAAACAAACATTCTCGCCCGTCATGGCGAAACCATTGAGAACAAATTCTCCAGCGAC AGCTTCAACAAGAACGGTGAATTCGTTGTTGTTGAGCATCAGAAGAAGAACATCACCAATACAACTTCAAATTTGTCGGT TACTTCCGCCAACGATGATCGCGTATACCCAGGTGCTCTTTTCCGTGCTGATAAGAATTTGATGGACAATATGCCAAGCC TGATTTCTGCAAACCGCGCTCCAATAACGTTGAGCGTTGATTTGCCGGGATTCCACGGCGGCGAAAGTGCTGTAACTGTT CAGCGCCCAACCAAGAGCTCTGTAACTTCCGCAGTGAACGGCTTAGTTTCTAAGTGGAATGCACAATATGGAGCAAGTCA TCATGTTGCAGCTCGCATGCAGTACGATTCTGCAAGCGCACAAAGCATGAACCAGCTCAAGGCTAAGTTTGGTGCTGATT TTGCCAAGATTGGTGTTCCGCTGAAGATTGATTTCGATGCAGTACACAAGGGTGAGAAGCAGACTCAAATTGTGAACTTC AAGCAAACTTACTACACCGTAAGCGTTGATGCACCAGATAGCCCAGCAGATTTCTTTGCTCCTTGCACTACGCCAGACAG CTTGAAGAACCGTGGCGTTGACAACAAGCGCCCACCAGTTTACGTGTCAAACGTAGCTTATGGTCGCTCAATGTACGTAA AGTTCGATACCACCAGCAAGAGCACTGATTTCCAGGCTGCGGTAGAAGCAGCAATTAAGGGCGTAGAAATCAAGCCAAAC ACCGAATTCCATCGCATTCTCCAGAATACTTCTGTTACTGCAGTGATTCTTGGTGGCAGCGCTAATGGTGCAGCTAAAGT TATTACAGGCAATATCGATACGCTTAAGGCTTTGATTCAGGAAGGTGCAAATTTGAGCACCTCTAGCCCAGCGGTTCCAA TTGCATACACCACTTCCTTCGTCAAGGATAACGAAGTAGCAACTTTGCAATCCAACAGCGATTATATTGAAACGAAGGTT TCTTCTTATCGCAATGGCTACTTGACTTTGGACCACCGTGGAGCTTATGTAGCTCGCTACTACATCTACTGGGATGAGTA CGGCACCGAAATTGACGGCACTCCTTACGTGCGTTCTCGCGCTTGGGAAGGCAATGGTAAGTATCGTACAGCTCACTTCA ACACCACTATTCAGTTCAAAGGAAATGTACGCAATCTACGAATCAAGTTGGTTGAAAAGACTGGTTTGGTTTGGGAACCA TGGCGCACAGTATATGACCGTTCTGATTTGCCACTAGTTCGTCAGCGTACTATTAGCAACTGGGGCACAACCTTGTGGCC TCGCGTTGCTGAAACTGTAAAGAACGACTGA Protein sequence : MKSTKFYRNAAMLLLAGATIVPQCLAAPAMAAPSAKDSEPATSCAAKKDSLNNYLWDLQYDKTNILARHGETIENKFSSD SFNKNGEFVVVEHQKKNITNTTSNLSVTSANDDRVYPGALFRADKNLMDNMPSLISANRAPITLSVDLPGFHGGESAVTV QRPTKSSVTSAVNGLVSKWNAQYGASHHVAARMQYDSASAQSMNQLKAKFGADFAKIGVPLKIDFDAVHKGEKQTQIVNF KQTYYTVSVDAPDSPADFFAPCTTPDSLKNRGVDNKRPPVYVSNVAYGRSMYVKFDTTSKSTDFQAAVEAAIKGVEIKPN TEFHRILQNTSVTAVILGGSANGAAKVITGNIDTLKALIQEGANLSTSSPAVPIAYTTSFVKDNEVATLQSNSDYIETKV SSYRNGYLTLDHRGAYVARYYIYWDEYGTEIDGTPYVRSRAWEGNGKYRTAHFNTTIQFKGNVRNLRIKLVEKTGLVWEP WRTVYDRSDLPLVRQRTISNWGTTLWPRVAETVKND |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hly | AAA69525.1 | listeriolysin O | Virulence | LIPI-1 | Protein | 2e-96 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| HMPREF9231_1348 | YP_005838650.1 | thiol-activated cytolysin | VFG1363 | Protein | 9e-129 | 53 |
| HMPREF9231_1348 | YP_005838650.1 | thiol-activated cytolysin | VFG2275 | Protein | 4e-90 | 42 |
| HMPREF9231_1348 | YP_005838650.1 | thiol-activated cytolysin | VFG0074 | Protein | 2e-96 | 41 |
