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Name : HMPREF9231_0108 (HMPREF9231_0108) Accession : YP_005837485.1 Strain : Gardnerella vaginalis HMP9231 Genome accession: NC_017456 Putative virulence/resistance : Unknown Product : DNA-binding helix-turn-helix protein Function : - COG functional category : - COG ID : - EC number : - Position : 122135 - 123661 bp Length : 1527 bp Strand : - Note : - DNA sequence : ATGGCACAGAATTTTGCAAACGACCTTAAAAAGGCCATGAAAATCAAAGGATATAAGCAGATTGATGTAATCGATCTTGC AGCAAAAAGCGGCCATAAGCTTGGCAAAAGCCAGTTAAGCCAGTATTTAAGCGGTAAAACTGAGCCACGCAAAGACGTGC GAGATATGCTTGCACAAATTCTTGAAATTAGCGACTACGGAATCAAAGGTGGGCATTCTTGCGCAAAAACCGCGCAAAAC TGCCAGTCTGTAGAAGAATCACAATTAAATCAGCCACATCTTACAGAAGATGAGCTTTCCGAAACACTCAAACATAGAAA CTTCAACAAATCCACCAAACTTGAGCACGTGCTTTACGACGTTCGAGGCCCTGTTGTAGAAGAAGCAAACCGCATGGAAG CAAACGGAACGCATATTTTAAAGCTCAACATTGGGAATCCTGCGCCTTTTGGCTTCCGCGCTCCAGACGAAGTGATTTAC GACATGCAACAGCAGCTTATTGACTGCGAAGGCTACTCGGATAGCCGCGGACTTTTCTCTGCGCGCAAAGCAATTATGCA ATACGACCAGCTTAAGGGTATTCCAGGCGTACAAATGGAAGATATTTACACTGGAAACGGCGTTTCCGAGCTGATTAATC TTTCTATGCAAGCGTTGCTTGATTGCGGCGACGAGATTCTTATACCAAGCCCAGACTACCCGTTGTGGACCGCGTGCGCT AGCCTGGCTGGCGGCACTCCTGTGCACTACATGTGTGACGAAAAGTCGCATTGGTACCCAGATATTTCCGACATTCGCTC TAAAATCACGCCTCGCACTAAAGCAATCGTGATTATTAACCCGAATAATCCTACGGGCGTGCTGTATAGTCGCGAAGTTT TGGAAGAGATTGTTAAGATTGCGCGCGAGTTTAATCTGATTATTTTTGCGGACGAGATTTACGACCGTCTTGTTATGGAC GGCAAAAAACATGTTTCGATTGCCTCTCTTGCTCCAGACGTGTTCTGCGTAACTTTTAGCGGACTTTCTAAGTCGCATAT GATTGCTGGCTTCCGCATTGGCTGGATGAGCCTTTCGGGAGATAAATTCAAAGCTCGCGACTACATTATGGGGCTTAACA TGCTGTCTAATATGCGCTTGTGCTCGAACGTTCCTGCACAGTCGATTATTCAGACTGCTTTGGGCGGATACCAGAGCGTT GAAAAGTATTTGGAGCCGGGCGGACGCGTGTATGAGCAGCGCGAGTATTGCTATAACGCACTTCAGGAGATGGATGGCGT AAGCGTTGAGCGACCAGATGCTGCTTTCTACATGTTTGTAAAACTCGATCCTGCTCGCTACAACATTCACGACGACGAAC AGTTTGCGCTTGATCTGCTACGCGATCAGAAGTTGCTGATTGTGCACGGAAAAGGCTTTAATTGGCAGACTCCAGGCTAC TTCCGCGTAGTCTACTTGCCACGCTTACAAACGCTTCGCGATGCAATGGGCAAACTCTCCAGCTTCCTCTCCTACTATCG CCAGTAG Protein sequence : MAQNFANDLKKAMKIKGYKQIDVIDLAAKSGHKLGKSQLSQYLSGKTEPRKDVRDMLAQILEISDYGIKGGHSCAKTAQN CQSVEESQLNQPHLTEDELSETLKHRNFNKSTKLEHVLYDVRGPVVEEANRMEANGTHILKLNIGNPAPFGFRAPDEVIY DMQQQLIDCEGYSDSRGLFSARKAIMQYDQLKGIPGVQMEDIYTGNGVSELINLSMQALLDCGDEILIPSPDYPLWTACA SLAGGTPVHYMCDEKSHWYPDISDIRSKITPRTKAIVIINPNNPTGVLYSREVLEEIVKIAREFNLIIFADEIYDRLVMD GKKHVSIASLAPDVFCVTFSGLSKSHMIAGFRIGWMSLSGDKFKARDYIMGLNMLSNMRLCSNVPAQSIIQTALGGYQSV EKYLEPGGRVYEQREYCYNALQEMDGVSVERPDAAFYMFVKLDPARYNIHDDEQFALDLLRDQKLLIVHGKGFNWQTPGY FRVVYLPRLQTLRDAMGKLSSFLSYYRQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| aspC | YP_005684271.1 | Aminotransferase AlaT | Not tested | PiCp 7 | Protein | 8e-113 | 56 |
| aspC | YP_003784329.1 | aspartate aminotransferase | Not tested | PiCp 7 | Protein | 8e-113 | 56 |
| aspC | YP_005686363.1 | Aminotransferase AlaT | Not tested | PiCp 7 | Protein | 8e-113 | 56 |
| aspC | YP_005682179.1 | Aminotransferase AlaT | Not tested | PiCp 7 | Protein | 8e-113 | 56 |
