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Name : lysS (HMPREF9231_1018) Accession : YP_005838340.1 Strain : Gardnerella vaginalis HMP9231 Genome accession: NC_017456 Putative virulence/resistance : Unknown Product : lysine--tRNA ligase Function : - COG functional category : - COG ID : - EC number : 6.1.1.6 Position : 1220599 - 1222272 bp Length : 1674 bp Strand : - Note : - DNA sequence : ATGACTGACACGAATACTGCAATGTCTGCCGCACAAAACGCCGCAGAAAATGACGTAACAGATAACGCCAATGAAATTGA CACCGTTGAGCATGCTGAGATGCTGCTCGCTCAAGATGAGGCTATTGCTAAGCGCGTAAATGATGGTGCTACTCTTGACG AAGCAATTGATCCAAGCAATAAAGAGTTTGGTCCGCTTGCGCACCCAGAGCAGGTGCAGATGCGTGTTGCTAAGCGTGCG ATGATGCTTAAGGAGGGTGTGCAGCCATACCCAGTGCATCTTAATGTTACGGATACTATCGAAAAGGTTCGTGCTGATTT TGATGGCAAGCTTGAAGCTGGCGAAGAAACTGATACCGAGGTTGGTATTGCAGGTCGCGTGCTTTTCTTGCGTAATGCTG GTGGCTTGTGCTTCGTTAAGCTTGCTGCTGGTGACGGCACTACGATTCAGGCGATGGTTTCCAAGAAGGAAATTGGCGAA GAATCTATTAAGAGCTTCAAGCAGATGGTTGATTTGGGCGACCATTTGTATGTTCGCGGTCGCGTTATTTCTTCTAAAAC TGGCGAGCTTTCCGTATTCGCAACTGAGTGGGCAATTGCAGCTAAGGCTTTGCAGCCACTTCCGGCTTTGCATAAGGAAT TAAGCGACGATACTCGTACGCGCAAGCCTTATATTGGCATGATTGCGGACGAGAAGATTCGCGATATGGTTCGCAGGCGT TCTCATGCTGTAGCTTCTCTTCGCCGCACTTTCGACAGCCACGACTTCTTGGAAGTTGAAACACCAATGTTGCAAACGGT TCACGGCGGCGCTGCTGCTCGTCCGTTTACAACTCATATGAACGCGTTCGACATTGATCTTTATTTGCGTATTGCGCCAG AGCTTTTCTTGAAGCGCTGCTTGGTTGGTGGCATTGATCGCGTGTTTGAAATCAACCGTGATTTTAGAAACGAAGGCGTA GATGCAACTCACGCTCCAGAGTTTACAATGCTCGAAGCTTACCAAGCTTATGGCACTTACGATACGATTGGAGCTCTTAC TAAAGAGCTGATTCAAAAGGCTGCTGTCGACGCTTTTGGCTCCACTAAGGTGACTTTGCTTAACGGCGAAGAGTACGATT TTGGCGGCGAGTGGAAGCAGATTACCATGTACGGCTCGCTTTCTGAGGCTTTGGGTGAGGAGATTACGCCAGAAACTTCT GTTGAGCATTTGGGTGCGATTGCAGACAAGCTTGGCGTTGAGCGCGACGAAGTGGAGAATCACGGCAAGTTGGTTGAGCA CTTGTGGGAGCACTTCTATGAGGATAAGCTTTATGAGCCAACGTTTGTGCGCGACTTCCCAGTGGAAACCAGCCCGCTTG TTAAGGGTCACCGTACTAAGCCAGGAATGGTTGAAAAATGGGATTTGTATGTGCGTGGCTTTGAGCTTGCAACCGGCTAC TCCGAGCTTAACGATCCTGTTGTGCAGCGCGAGCGCTTTGTGGCTCAAGCTAAGGATGCTTTGGCTGGAGATGTTGAGGC AATGGATATTGACGAGGACTTCATTGAGGCTCTTGGCGTCGGTATGCCTCCTGCTGGCGGCATGGGAATGGGTATTGACC GCTTGCTGATTGCGCTTACGGGCGCAACCATTCGCGAGACGATTACGTTCCCACTCGTAAAGCCTCTTCGCTAA Protein sequence : MTDTNTAMSAAQNAAENDVTDNANEIDTVEHAEMLLAQDEAIAKRVNDGATLDEAIDPSNKEFGPLAHPEQVQMRVAKRA MMLKEGVQPYPVHLNVTDTIEKVRADFDGKLEAGEETDTEVGIAGRVLFLRNAGGLCFVKLAAGDGTTIQAMVSKKEIGE ESIKSFKQMVDLGDHLYVRGRVISSKTGELSVFATEWAIAAKALQPLPALHKELSDDTRTRKPYIGMIADEKIRDMVRRR SHAVASLRRTFDSHDFLEVETPMLQTVHGGAAARPFTTHMNAFDIDLYLRIAPELFLKRCLVGGIDRVFEINRDFRNEGV DATHAPEFTMLEAYQAYGTYDTIGALTKELIQKAAVDAFGSTKVTLLNGEEYDFGGEWKQITMYGSLSEALGEEITPETS VEHLGAIADKLGVERDEVENHGKLVEHLWEHFYEDKLYEPTFVRDFPVETSPLVKGHRTKPGMVEKWDLYVRGFELATGY SELNDPVVQRERFVAQAKDALAGDVEAMDIDEDFIEALGVGMPPAGGMGMGIDRLLIALTGATIRETITFPLVKPLR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 2e-137 | 57 |
