Gene Information

Name : capL (KN400_1968)
Accession : YP_006890934.1
Strain : Geobacter sulfurreducens KN400
Genome accession: NC_017454
Putative virulence/resistance : Virulence
Product : UDP-N-acetyl-D-galactosamine 6-dehydrogenase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2098061 - 2099347 bp
Length : 1287 bp
Strand : -
Note : -

DNA sequence :
ATGACCGCTGACCGCACCATTTCCGTTATCGGACTCGGCTACGTGGGACTCCCCGTGGCGGTTGCCTTCGGCCGTGTCCG
TCGGACTGTCGGATTCGACATCAATGCCGGCCGCATCGCCGAGCTCAAGCAGGGGATCGATCGAACCGGCGAGGTGACTG
CTGAGGCCCTGGCCGCAGCGAACATCCTTTTCACCGACCGCATCGAGGAACTCCGTCTGGCGGATTTTCACATCGTGGCG
GTGCCGACTCCCATCGATGAAGCGAATCAGCCCGACCTTACCCTGATGCTGAAGGCGTCGGAAACGGTGGGTAAGGCCCT
GAAGCAGGGCGACATCGTGGTGTACGAGTCCACAGTGTATCCCGGTGTCACTGAGGACGAGTGCGTGCCGATCCTGGAAC
GGGTGTCGGGACTGCGCTGCGGCACCGATTTCACCGTGGGCTACAGCCCTGAGCGGATCAATCCGGGCGACAGGGAGCAT
ACTTTCACGAAGATCACCAAAGTAGTGTCGGGGCAGGATGCTGCGACACTCGACGTAGTTGCCCGAGTGTATGAATCAGT
GGTGACGGCGGGGGTTCACCGGGCGTCGAGCATCAAGGTGGCCGAAGCGGCCAAGGTGATTGAGAACACACAACGGGACC
TGAACATCGCCCTCATGAACGAGTTGGCCCTGATTTTCGACCGGCTGGGCATCGACACTAGCGAGGTGCTGGAGGCGGCC
GGAACCAAGTGGAACTTCCTCAGGTTCAAGCCGGGGCTCGTGGGAGGGCATTGCATCGGTGTGGATCCGTACTATCTGAC
CCACAAGGCGGAGAAGATCGGTTACATCCCCCAGGTGATCCTGGCGGGCCGCAGGATCAACGACGGTATGGGCAAATTCG
TGGCCCAGAAGACGGTGAAAGAGATGATCCTGGCCGGACACCCGGTTCTGGGAGCCAGGGTGACGGTGCTCGGCCTCACC
TTCAAGGAGGATTGCCCTGACCTGCGCAATTCCCGAGTGATCGACATTATCCGCGAACTTGAGGAGTATGGTGTGAAGGT
TCAGGTCTACGACCCCTTGGCCGACCCCAACGAGGCCCTGCATGAATACGGGGTGACGCTTGTGCCGGCAGATGGTCTGG
AGCCTGCAGCTGCGGTGGTTGCCGCTGTGGCACACCGTCAGTTCCGGTCCCTGGCCGGGGATGACTTGCTTCGATTGATG
GGGCACCCCCCGGTTCTCATGGACGTTAAGGGTATGTACGACCAGAACATGCTGCGGCAGGCGGGAATCCGCTTCTGGAG
GCTCTGA

Protein sequence :
MTADRTISVIGLGYVGLPVAVAFGRVRRTVGFDINAGRIAELKQGIDRTGEVTAEALAAANILFTDRIEELRLADFHIVA
VPTPIDEANQPDLTLMLKASETVGKALKQGDIVVYESTVYPGVTEDECVPILERVSGLRCGTDFTVGYSPERINPGDREH
TFTKITKVVSGQDAATLDVVARVYESVVTAGVHRASSIKVAEAAKVIENTQRDLNIALMNELALIFDRLGIDTSEVLEAA
GTKWNFLRFKPGLVGGHCIGVDPYYLTHKAEKIGYIPQVILAGRRINDGMGKFVAQKTVKEMILAGHPVLGARVTVLGLT
FKEDCPDLRNSRVIDIIRELEEYGVKVQVYDPLADPNEALHEYGVTLVPADGLEPAAAVVAAVAHRQFRSLAGDDLLRLM
GHPPVLMDVKGMYDQNMLRQAGIRFWRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1L AAA64651.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 8e-124 62
tviB NP_458740.1 Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 2e-110 57
tviB NP_807945.1 VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 2e-110 57

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
capL YP_006890934.1 UDP-N-acetyl-D-galactosamine 6-dehydrogenase VFG0431 Protein 7e-111 57