Gene Information

Name : KN400_1105 (KN400_1105)
Accession : YP_006890137.1
Strain : Geobacter sulfurreducens KN400
Genome accession: NC_017454
Putative virulence/resistance : Virulence
Product : sigma-54-dependent transcriptional response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1183166 - 1184527 bp
Length : 1362 bp
Strand : -
Note : 'domains: REC, sigma54 interaction, HTH8'

DNA sequence : 
ATGAAAGAGCGGACCAAAATCCTCCTGATCGACGATGAAGAAACGGGACGCGAAGCCCTCACCCTCCTGCTGAAGGCGGC
CGGTCATGCGGTGAAAAGCGCCGGGGCGGGCAGCGAGGCCTTCCAGACCCTTACTCGCGACACCTTCGACATTGTCATTA
CCGACCTTTTTCTCCCCGACGCCAGCGGTATCGACATCCTGAAAAAAGTCAAGGAAGACGCCCCGCTCACCGAAGTGATC
CTCATCACCGGCCACGCCTCGGCAGAAACGGCAGTGAAGGCGATGAAAGAGGGTGCTTTCGACTACATCACCAAACCCCT
CAACTTCGACGAACTGAAGATCATTATCGGCAAGGCCGTGGAGAAGCGGCAGCTCTTGTCCGAAAACGTCTACCTCCGGA
AGCAGCTGCGCGACAAGTTCGAATTCGCCAATATCATCGGCAGCTCTCCCGCCATGCAGCACGTCTTCGCCCTCATGAAG
CGGATCGTCAAAACCGACTCGACCGTGCTGATAGCCGGCGAATCGGGGACCGGCAAAGAATTGGTGGCCAAGGCGATCCA
CTTCAACGGCGGGCGACGCGACAAACCGTTCATTGCCGTCCACTGCGGGGCTATCCCGGAAAACCTGCTGGAATCGGAAC
TTTTCGGCTACGTCAAGGGTGCGTTCACCGGTGCGATGCGGGACAAAATCGGCAAGTTCGAAGCAGCCAACGGCGGAACC
ATCTTCCTCGATGAAATCGGCACCATGCCGATGCAGTTGCAGACAAAGCTCCTGCGCGTGCTTCAGGAAGAGGAAGTGGA
ACGAGTGGGCTCCACCCGCCCCGTCAAGATCGATGTCCGGATCATATCGGCCACCAACCTGGATCTGGCGGAGGAGGTCA
AAAAGGGCAACTTCAGGGAAGATCTCTTTTACCGGCTCAACGTGATCCCCCTGCAGCTCCCCCCCTTGAGGGAGCGGGTC
GAGGACATCCTCCCCCTGGCCAAACACTTTCTTGCCAAGTACTGCAAGGAGATGCAGCGACGGAACATGTCGCTTGCCAG
CGACACGCTCGAGGCACTGGAAAGCTACCAGTGGCCCGGTAACGTGCGGGAGCTGGAGAACGTCATGGAGCGGGTGGCGG
CCCTTACCGAAGACAACACCGTTACCGTTCAGGACCTGCCGCACAATATCCGGGAGGAGGGATTGACCCGCCTGACCGGC
AAGGGGGTCGACCTCGTAAAGGTGCTGGCTGAAATCGAGCGGGGGATGATCAGGGACGCGCTGGTCCTGTCAGAGGGGGT
CAAGGCTAGGGCCGCGGCGCTGCTCAACCTGAACAGGACAACCCTGGTGGAAAAGATGCGGCGGCTCGGCATGCCGCTCT
GA

Protein sequence : 
MKERTKILLIDDEETGREALTLLLKAAGHAVKSAGAGSEAFQTLTRDTFDIVITDLFLPDASGIDILKKVKEDAPLTEVI
LITGHASAETAVKAMKEGAFDYITKPLNFDELKIIIGKAVEKRQLLSENVYLRKQLRDKFEFANIIGSSPAMQHVFALMK
RIVKTDSTVLIAGESGTGKELVAKAIHFNGGRRDKPFIAVHCGAIPENLLESELFGYVKGAFTGAMRDKIGKFEAANGGT
IFLDEIGTMPMQLQTKLLRVLQEEEVERVGSTRPVKIDVRIISATNLDLAEEVKKGNFREDLFYRLNVIPLQLPPLRERV
EDILPLAKHFLAKYCKEMQRRNMSLASDTLEALESYQWPGNVRELENVMERVAALTEDNTVTVQDLPHNIREEGLTRLTG
KGVDLVKVLAEIERGMIRDALVLSEGVKARAAALLNLNRTTLVEKMRRLGMPL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-61 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-61 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
KN400_1105 YP_006890137.1 sigma-54-dependent transcriptional response regulator BAC0089 Protein 9e-90 50
KN400_1105 YP_006890137.1 sigma-54-dependent transcriptional response regulator BAC0467 Protein 3e-74 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
KN400_1105 YP_006890137.1 sigma-54-dependent transcriptional response regulator VFG1249 Protein 8e-69 45
KN400_1105 YP_006890137.1 sigma-54-dependent transcriptional response regulator VFG0116 Protein 5e-68 44
KN400_1105 YP_006890137.1 sigma-54-dependent transcriptional response regulator VFG1214 Protein 1e-71 43