Gene Information

Name : phoB (KN400_1078)
Accession : YP_006890110.1
Strain : Geobacter sulfurreducens KN400
Genome accession: NC_017454
Putative virulence/resistance : Virulence
Product : winged-helix phosphate transcriptional response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1158519 - 1159196 bp
Length : 678 bp
Strand : -
Note : 'domains: REC, trans_reg_C'

DNA sequence :
ATGAAGACGATACTTATTATCGAAGACGAGCGCGACCTGGCCGATCTGGTGGCCTTCAACCTTGAAAAGGAGGGGTATCG
GACCCTCACGGCACTGGATGGCGCGAACGGCCTGGAATTAGCCCGCAGCCAGCCTCCCGACCTGATCCTGCTGGACCTGA
TGCTGCCGGGTATGATGGGGATGGAGGTCTGCAAAATCCTCAAGAAGTCGGAAAAGACCGCCCACATCCCGGTCATCATG
CTGACGGCGCGCGGCGAGGAGATCGACCGCGTGGTCGGATTCGAGGTCGGGGCCGACGATTACGTGGTAAAACCCTTCTC
CACCCGCGAGTTGCTGCTCAGGGTAAAAGCGGTGCTGCGCCGCTCCCTCCCCGACAAGCCGGAAGGAAAGGTCATCAATG
TCGGGCCGGTGACGATCGACACGGAGCGGCACATGGTGGCCGTGGAGGGAGATGATGTCACCCTGACCACGACCGAGTTC
AAGCTGCTGCTGAACCTTGCCGAGCGGCTCGGCCGGGTCCAGAGCCGCGACCTCCTTCTCAAGAATGTGTGGGGGTATAA
TTACGTGGGAGACACCCGCACGGTGGATACCCACATCACCCGCCTGCGGACGAAGCTGGGACAGGCCGGAGAGCTGATCA
AGACTGTTCGCGGCTTCGGCTACAAGATGGAGGAATAG

Protein sequence :
MKTILIIEDERDLADLVAFNLEKEGYRTLTALDGANGLELARSQPPDLILLDLMLPGMMGMEVCKILKKSEKTAHIPVIM
LTARGEEIDRVVGFEVGADDYVVKPFSTRELLLRVKAVLRRSLPDKPEGKVINVGPVTIDTERHMVAVEGDDVTLTTTEF
KLLLNLAERLGRVQSRDLLLKNVWGYNYVGDTRTVDTHITRLRTKLGQAGELIKTVRGFGYKMEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-24 42
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 4e-29 42
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 7e-29 42
mprA YP_005680459.1 response regulator mprA Not tested PiCp 3 Protein 2e-25 41
mprA YP_005682550.1 response regulator mprA Not tested PiCp 3 Protein 2e-25 41
tcsR1 YP_003782583.1 two-component system transcriptional regulatory protein Not tested PiCp 3 Protein 2e-25 41
mprA YP_005684640.1 response regulator mprA Not tested PiCp 3 Protein 2e-25 41
CDB402_0209 YP_005126722.1 two-component system response regulator Not tested Not named Protein 7e-25 41
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-23 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator HE999704.1.gene2815. Protein 2e-39 47
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator NC_012469.1.7685629. Protein 5e-38 46
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator NC_003923.1003749.p0 Protein 1e-40 46
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator NC_002952.2859905.p0 Protein 2e-40 45
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator NC_009641.5332272.p0 Protein 1e-40 45
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator NC_013450.8614421.p0 Protein 1e-40 45
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator NC_007793.3914279.p0 Protein 1e-40 45
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator NC_007622.3794472.p0 Protein 2e-40 45
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator NC_002745.1124361.p0 Protein 1e-40 45
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator NC_009782.5559369.p0 Protein 1e-40 45
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator NC_002951.3237708.p0 Protein 1e-40 45
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator NC_002758.1121668.p0 Protein 1e-40 45
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator NC_007793.3914065.p0 Protein 3e-34 44
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator NC_002758.1121390.p0 Protein 3e-34 44
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator NC_010079.5776364.p0 Protein 3e-34 44
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator NC_002952.2859858.p0 Protein 3e-34 44
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator NC_007622.3794948.p0 Protein 3e-34 44
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator NC_003923.1003417.p0 Protein 3e-34 44
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator NC_013450.8614146.p0 Protein 3e-34 44
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator NC_002951.3238224.p0 Protein 3e-34 44
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator AE015929.1.gene1106. Protein 5e-28 43
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator HE999704.1.gene1528. Protein 9e-28 43
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator AE000516.2.gene3505. Protein 1e-30 43
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator BAC0197 Protein 3e-24 43
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator NC_012469.1.7686381. Protein 4e-36 42
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator AE016830.1.gene1681. Protein 4e-38 42
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator CP004022.1.gene1676. Protein 4e-26 42
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator CP001918.1.gene5135. Protein 6e-25 42
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator CP000675.2.gene1535. Protein 8e-30 41
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator NC_002695.1.916589.p Protein 3e-25 41
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator BAC0596 Protein 8e-25 41
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator CP000034.1.gene2186. Protein 3e-25 41
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator BAC0039 Protein 3e-25 41
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator CP001138.1.gene2239. Protein 8e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator VFG1389 Protein 9e-26 44
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator VFG0596 Protein 6e-25 42
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator VFG1563 Protein 2e-29 42
phoB YP_006890110.1 winged-helix phosphate transcriptional response regulator VFG1702 Protein 3e-29 42