|
Name : hsdR (R2866_0867) Accession : YP_005827547.1 Strain : Haemophilus influenzae R2866 Genome accession: NC_017451 Putative virulence/resistance : Unknown Product : Type I restriction enzyme HindVIIP, R protein Function : - COG functional category : - COG ID : - EC number : 3.1.21.3 Position : 888251 - 891433 bp Length : 3183 bp Strand : - Note : - DNA sequence : ATGCTCAACGAAAACGACATCGAACAACTCACTCTTCAACGCCTGCAATCCCTCGGTTGGGAATATCGCTATGGTAAAGA CTTGCCTGTTCATGAGGGCAAGTTTGCCCGTGGCGATTTGAGCGGCGTAGTCTTTGTTGAGCAACTGCGTGAGGCGGTGC GTAAACTTAATCCGCAGCTGCCTGAAAGTGCGGTGGATTCTGTGGTGAAATCCGCGACGAAAAGCGATATTGGCGATTTG GTTGTGCGTAATCAGACGTTTTATAAACTGCTGCGTGATGGCGTGCGGGTGGAATATCAGGCTCCCAATAGCCACGGACA AAATGAGCAGAAAATTGAGATGGTGCGTTTGGTGGATTTCGAGCATTGGGAAAACAACCGTTTTGTTGCCGTCAATCAGC TGGAAATCCGCAGCCGCAAAGGAGGTAAACGAATTCCCGATATTATCGGCTTTGTCAATGGCTTACCGTTGGTGGTATTT GAGCTCAAAAATCCACTACGTGAATCGGCGGATTTGTTGCAGGCGTTTAATCAGTTTGAAACCTATAAAGATGAAATTGC CGAGCTGTTTGTTTACAACCAAGCCCTGATTATTTCAGACGGTATTGTCGCCCGTTTGGGTTCGCTTTCGGCAGATTTCC AACGCTTTACGCCGTGGAAAGTGGTCGATGAAAAAAATAAAAGCGTGCGGTTATATTTTGACGATGAGTTGCAAAGCCTG CTTAATGGCTTGCTAAAGCCTGAGGATTTATTGGACTATATCCGCTATTTCGTCTTATTTGAACGGGATTCCGTTGGCAA AACCATTAAAAAAATCGCAGCGTACCATCAATATTACGGCGTAAATGAAGCGGTAGATTCCACTATTTGGGCGACCTCAG AAAAAGGCGACCGCCGCATTGGCGTGATGTGGCATACGCAAGGTTCGGGTAAATCAATTTCCATGTTGTTTTATGCAGGC AAACTGCTTGCACAGCCTGAATTGAAAAATCCCACTATTGTGGTGGTCACCGACCGTAACGATTTGGACGGTCAGCTTTT CCAAACTTTTTCTTCAGGCAAGGATTTAATCAAACAAACACCGCAGCAAGTAGAAGACCGTGATCAACTGCGCCAACTGC TCGCGCAAAATGAAGTCGGCGGCGTGTTTTTTACTACGATTCAGAAATTCGCCCTAAATGAGGAAGAAAGCCGCTTCCCT GTTTTAAATGAGCGCAGCAATATTATTGTGATCAGCGATGAGGCTCACCGCAGCCAATATGGCTTTACGCAAAAGCTGCA TAACGGCAAGTTTCAGGCAGGCTACGCCCGCCATTTACGCGATGCGCTGCCCAATGCATCGTTTATCGGTTTTACAGGTA CGCCAATTAGCCTAGAAGATAAGGACACGCAAGATGTGTTCGGTCGTTATGTGTCCATTTATGACTTGCAAGATGCGGTG GAAGATGGCGCAACCGTGCCGATTGTGTATGAAGCACGCCAAATCAAGCTAGCGGAGAATGCTAATCACGATGAATTATT TGCAGAAATTGATGAACTGCTGGAAGGCGAAAAAAACCCGAAATTACGCTTGCGAGAAAAATTGCTCGGCTCAGAAGCTC GATTGCATGATTTAGCGGTCGATTTTGTGCAACATTTTGCCAAACGCAATGAAGTGGTGGACAGCAAAGCGATGATGGTG GTTTCCAGCCGTCAGATTTGCGTGGATTTGTATAATCAGATCATCGCTCTGCACCCTGAATGGCATTCGGATAATATCAA TGAGGGTGCGATTAAAATTGTGATGACAGGTTCTGCTTCCGATGCGTCTGAAATGCAGAAACACGTTTACAGTAAGCAGG AAAAACAAACGCTAGAACGCCGCTTTAAAGACCCGAACGATCCGCTGAAGGTGGTGATTGTGCGTGATATGTGGCTGACA GGCTTTGATGCACCTTGCTGTAACACGATGTATATCGACAAGCCGATGCAGGGGCATAACCTAATGCAAGCCATCGCACG AGTAAACCGTGTATTCGCTAACAAAAGTCGTGAAAACGGTGGGCTTATCGTGGATTATGTTGGTTTGGCAGAAGAATTAC GAGCAGCCACACAGCAATACACCAACTCTACTGGCAAAGGGCAATTAGCGGAAGATGTGCAAAGCGTGTTCTTTAAAATG AAAGAACAGCTTGAATTTATCCGAACTTTGTTTGCGACACCAATTGAAGGAAAAACTTTTGATGTTCAGATTGCCTTAGA AAAAGATAATCCGAATGATCTTTTGATGGCGATTCGTTTTGCCGCCAACCATATTTTAAGCCTTGATCAATTATCGTTTG ATGGCAAAGCGCACGAGCAGCATTGGTTTAATAAAAAAGAAACCGAGCCACGCAAAAAAGCCTTTTTGAAGGCGGCAGGT TTGGTAAAAAAAGGCTATATGCTGTGCGGTACATTGGCTGAAGTTGAGCCGTATAACCAAGAAATCGCCTTTTATGATGC CGTACGGGCAATTTTAACTAAACGTGAACAAAAAGGCACAGGCACAAATGAAAGACAGATTTTATTGAAAAAATTGGTCA ATCAAACTGTGTATTCTGAAGGCGTGATTGATTTATTCGATCTGCTAGAAAAACCACAACCACAAATTAGCTTACTTTCC GAGGAATTTTTACAAACTGTAAAAAATAGCCCAACTAAAAATTTATGGGTTAGCGCGATGGAGCGTTATTTGGCAAGTGA AATTAAAGTTAAATCAGGCACAAACTTAACATTGCAAAAAGATTTTGAACGGCGTTTGAAGGAAGCATTGAATCAATACC ACAATCACAATTTGACTGTGGTAGAGATTTTGGACGAACTCTTTAAAATGAGCCAAGATTTCCAAGAACGTTTAGCATTA GGGAAAAAACTAGGATTAACCAAGGAAGAACTAGCCTTCTATGAAGCTCTATCTCAAAATCAAAGTGCAAAAGATTTGAT GGGTGATGAAGTGCTTTCTAAACTGGCGAAAGAAATCACGGAAACACTTAGAAAATCGGTCACAATCGACTGGCAGTACA AAGAAGCGGTGCGGGCAAGAATTAGATTACTCGTTCGACGTGCCTTACAAAAATATAAATACCCGCCTGATAAACAGGAA GAAGCGGTAACTTATGTGATTAAACAAGCTGAAGAAATTGCTGAGGATTTAACTGGTTTATAA Protein sequence : MLNENDIEQLTLQRLQSLGWEYRYGKDLPVHEGKFARGDLSGVVFVEQLREAVRKLNPQLPESAVDSVVKSATKSDIGDL VVRNQTFYKLLRDGVRVEYQAPNSHGQNEQKIEMVRLVDFEHWENNRFVAVNQLEIRSRKGGKRIPDIIGFVNGLPLVVF ELKNPLRESADLLQAFNQFETYKDEIAELFVYNQALIISDGIVARLGSLSADFQRFTPWKVVDEKNKSVRLYFDDELQSL LNGLLKPEDLLDYIRYFVLFERDSVGKTIKKIAAYHQYYGVNEAVDSTIWATSEKGDRRIGVMWHTQGSGKSISMLFYAG KLLAQPELKNPTIVVVTDRNDLDGQLFQTFSSGKDLIKQTPQQVEDRDQLRQLLAQNEVGGVFFTTIQKFALNEEESRFP VLNERSNIIVISDEAHRSQYGFTQKLHNGKFQAGYARHLRDALPNASFIGFTGTPISLEDKDTQDVFGRYVSIYDLQDAV EDGATVPIVYEARQIKLAENANHDELFAEIDELLEGEKNPKLRLREKLLGSEARLHDLAVDFVQHFAKRNEVVDSKAMMV VSSRQICVDLYNQIIALHPEWHSDNINEGAIKIVMTGSASDASEMQKHVYSKQEKQTLERRFKDPNDPLKVVIVRDMWLT GFDAPCCNTMYIDKPMQGHNLMQAIARVNRVFANKSRENGGLIVDYVGLAEELRAATQQYTNSTGKGQLAEDVQSVFFKM KEQLEFIRTLFATPIEGKTFDVQIALEKDNPNDLLMAIRFAANHILSLDQLSFDGKAHEQHWFNKKETEPRKKAFLKAAG LVKKGYMLCGTLAEVEPYNQEIAFYDAVRAILTKREQKGTGTNERQILLKKLVNQTVYSEGVIDLFDLLEKPQPQISLLS EEFLQTVKNSPTKNLWVSAMERYLASEIKVKSGTNLTLQKDFERRLKEALNQYHNHNLTVVEILDELFKMSQDFQERLAL GKKLGLTKEELAFYEALSQNQSAKDLMGDEVLSKLAKEITETLRKSVTIDWQYKEAVRARIRLLVRRALQKYKYPPDKQE EAVTYVIKQAEEIAEDLTGL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 49 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 42 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 42 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 42 |
