Gene Information

Name : FN3523_1813 (FN3523_1813)
Accession : YP_005824867.1
Strain : Francisella novicida 3523
Genome accession: NC_017449
Putative virulence/resistance : Virulence
Product : ClpB protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1905534 - 1908113 bp
Length : 2580 bp
Strand : +
Note : -

DNA sequence :
ATGGATATAAATAAATTTACAATAAAACTACAGGAAGCATTAGCAGAAGCTCAATCTTATGCTTTTCAGCAAAAAGCTAC
TGAGTTTACATCAGCACACATGCTAAAAGCTCTTTTGGAGCAAAATGATAGTGTTGTTGCATCAATTCTTAGTGTTTGTG
GTGTTAATACACAGAACTTTACAAAAGCAATAAATGATGTGGTTGATAGTGTTGCGGTTCTATCTGGAGAAGTTAATCCT
CAAGTAGCGCCATCTAGAGATCTAATAGCTACACTACACAAGATGCAAGAGCTTGCTAATAAAAATGGCGATGAGTTTAT
TTCAAGTGAAGTTTTCTTATTAGCCACTTTGGAAGACAAAAGTTTAATAGGACTGTATAACAAGTTTGGAATTACAAAAG
AAAAACTGACAAAAGCAGTCAATGATTATCGCGGAGGGGAAAAAGTGAGTAGTCAAAATCAAGAAGATATGAAAGGTGCA
TTAGACAAATACACTGTAGATCTAACTGATCTAGCAAGAAAAGGAAAGATTGATCCTATTATTGGTAGAGATAGTGAAAT
TCGTAGAACTATACAAGTACTACAAAGAAGAACTAAGAACAATCCCGTGCTTATAGGTGAACCAGGTGTTGGTAAAACTG
CTATTGTAGAAGGCTTAGCTCAACGAATAGTTAATAATGAGGTCCCAGAGGGTGTCAAAGGCAAAAAGGTACTATCTTTG
GATATGGGTGCATTATTAGCTGGTGCTAAATTTAGAGGAGATTTTGAAGAGAGATTAAAATCTGTTTTAAAAGAATTATC
AAAACAAGAAGGTAATGTGATTCTATTTATAGATGAATTACATACTATGGTTGGGGCAGGTAAAGCAGAAGGCTCAATGG
ATGCTGGTAATATGCTTAAGCCAGCTTTAGCTAGAGGTGAGCTAAAGTGTGTTGGTGCAACAACTCTAGATGAATATCGT
GAGTATGTTGAAAAAGATCCTGCACTTGAAAGAAGATTCCAAAAAGTGCTTGTTGATGAGCCAACTGTTGAAGATACTAT
TGCTATACTTAGAGGTCTGAAAGAAAGATACGAGTTGCACCATGGTGTGAATATCACGGACTCGGCTATTGTGAGTGCTG
CTACTTTATCGCATAGATATATTACAGATAGACAACTACCTGATAAGGCTATAGATTTAGTAGATGAAGCAGCTAGCCAA
ATTCGTATGGAAATAGATTCTAAACCTGAAAAAATGGAGAGTTTATACCGTAGAATTATCCAACTAAAAATGCAACGTGA
GCAGCTAAAAAAAGAAAAAGATGAGGCTACTAAGAAGCGTTTAGAGATACTAGAAACTGAAATCAAAGGCTTAGAATCTG
AATATCAAGGTTTTGAGGAGCTTTGGAAAGCTGAGAAGCTGAAAATGCAAGGGGCTAGTAAACTTAAAGAGCAACTTGAA
AAAACCAAATTTGAGCTTGAGAAATATCAAAGAGCTGGCGATTTGAGCAAAATGGCAGAATTACAATACGGTAAGATACC
AGAACTTGAAGCTCAAATTAAACAAATTGAAAATACTGAAGCAGAACCTTCTGAAAATAAACTAGTCAGAACATCTGTCA
CAGAAAATGAAATTGCCGATGTAGTTTCTAAAGCTACGGGTATACCTGTATCTAAAATGATGGAAGGTGAAAAAGACAAG
CTTCTAAATATGGAAAGCTTCCTACATAAGAGAGTAATTGGCCAAGATCAAGCTATAAAAGCAGTATCAAATGCTGTAAG
AAGATCTCGTTCTGGATTATCAGATCCAAATAGACCTATAGGTTCATTTATGTTCTTAGGTCCAACAGGTGTAGGTAAAA
CTGAGCTTACAAAAGCATTAGCGGAGTTCTTATTTGATGATGAAGATGCGATGCTTAGAGTGGATATGTCTGAGTTTATG
GAGAAACATTCTGTAGCTAGACTAATCGGAGCTCCTCCAGGATATGTTGGTTATGAGCAAGGTGGTTATCTGACAGAGCA
TATTAGAAGAAAACCTTATTCTGTAATTTTGCTAGATGAGGTTGAAAAAGCTCATGCAGATGTATTTAACATATTGCTAC
AAGTATTAGATGATGGGCGACTAACTGATGGTCAAGGCAGAACAGTTGACTTTAAAAATACTGTAATAGTTATGACTTCT
AATCTTGGTTCACATAGAATCCAAGAAATGCAAGGTCAAGACTATGACATAGTCAAAGATGCTGTAATGGAAATGGTACT
TAGCCACTTTAGACCAGAATTTGTAAACAGGGTTGATGATGCAATTGTCTTCGAACCTCTAAATAAAGAGATGATAACTG
AAATAGCTAAGATACAAATTAAGCGTTTAGAAAAACGTCTAAGAGATCTAAATATAGGCTTAGAAGTAACTGCTAAAGCT
ATGGATAAATTAGCTGATGCTGGTTTTGACCCTGTATTTGGTGCTAGACCACTTAAACGAGCTATCCAAAACAACTTAGA
AAACCCTCTGGCTCTAAAACTTCTAGATGGTGAGTTTAAAGCTGAAGATAAAATAGTTGTTGATATTGACGCTAATAATA
ATATTACATTCTCTAAGTGA

Protein sequence :
MDINKFTIKLQEALAEAQSYAFQQKATEFTSAHMLKALLEQNDSVVASILSVCGVNTQNFTKAINDVVDSVAVLSGEVNP
QVAPSRDLIATLHKMQELANKNGDEFISSEVFLLATLEDKSLIGLYNKFGITKEKLTKAVNDYRGGEKVSSQNQEDMKGA
LDKYTVDLTDLARKGKIDPIIGRDSEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNNEVPEGVKGKKVLSL
DMGALLAGAKFRGDFEERLKSVLKELSKQEGNVILFIDELHTMVGAGKAEGSMDAGNMLKPALARGELKCVGATTLDEYR
EYVEKDPALERRFQKVLVDEPTVEDTIAILRGLKERYELHHGVNITDSAIVSAATLSHRYITDRQLPDKAIDLVDEAASQ
IRMEIDSKPEKMESLYRRIIQLKMQREQLKKEKDEATKKRLEILETEIKGLESEYQGFEELWKAEKLKMQGASKLKEQLE
KTKFELEKYQRAGDLSKMAELQYGKIPELEAQIKQIENTEAEPSENKLVRTSVTENEIADVVSKATGIPVSKMMEGEKDK
LLNMESFLHKRVIGQDQAIKAVSNAVRRSRSGLSDPNRPIGSFMFLGPTGVGKTELTKALAEFLFDDEDAMLRVDMSEFM
EKHSVARLIGAPPGYVGYEQGGYLTEHIRRKPYSVILLDEVEKAHADVFNILLQVLDDGRLTDGQGRTVDFKNTVIVMTS
NLGSHRIQEMQGQDYDIVKDAVMEMVLSHFRPEFVNRVDDAIVFEPLNKEMITEIAKIQIKRLEKRLRDLNIGLEVTAKA
MDKLADAGFDPVFGARPLKRAIQNNLENPLALKLLDGEFKAEDKIVVDIDANNNITFSK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 1e-106 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
FN3523_1813 YP_005824867.1 ClpB protein VFG0079 Protein 3e-170 46