Gene Information

Name : FSU_3254 (FSU_3254)
Accession : YP_005822997.1
Strain : Fibrobacter succinogenes S85
Genome accession: NC_017448
Putative virulence/resistance : Virulence
Product : lipopolysaccharide synthesis sugar transferase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3770196 - 3770831 bp
Length : 636 bp
Strand : -
Note : identified by similarity to GB:AAF18949.1; match to protein family HMM PF02397

DNA sequence : 
GTGCATAAGACTCCCTATACACTCTTTTTTAAGCGACTTTTTGATATCGTCCTTTCCGGTTTTGGCATCATCGTACTTGC
AATCCCGATGCTTGTAATCGCTATCGCCATCAAGCTCGATAGCAAGGGTCCTGTACTCTTCAAGCAAAAACGCGTGGGTT
TGCACAAGAAGCATTTTAACATCTACAAGTTCCGCACCATGCGTACCGATACGCCCAAAGACGCCCCGACGCACGAATTG
AGCGACCCCAAGAAGTGGATTACCAAGGTGGGCGGATTCCTCCGCAAGACGAGCCTTGATGAACTCCCGCAGATGTTCAA
CATTTTTGAAGGGACCATGAGCATCATCGGCCCGCGTCCGGCGCTGTGGAACCAGTACGACTTGATTGAAGAGCGTGACA
AGTATGGTGCAAATGACGTTCCCGTAGGCCTGACCGGCTGGGCTCAGATTAACGGTCGTGATGAACTTGAAATTCCTGTG
AAGGCGGCACTAGACGGTGAATACGTAAAGCGCCAGAGCTTTTTGTTTGATTGCAAGTGCTTCTTTGGCACGTTTATCAG
CGTGCTCAAGAGTGACGGTGTCGTAGAAGGCGGTACCGGTGAAATCCACAAGCATGAGCAGGAGGCTCGCCAATGA

Protein sequence : 
MHKTPYTLFFKRLFDIVLSGFGIIVLAIPMLVIAIAIKLDSKGPVLFKQKRVGLHKKHFNIYKFRTMRTDTPKDAPTHEL
SDPKKWITKVGGFLRKTSLDELPQMFNIFEGTMSIIGPRPALWNQYDLIEERDKYGANDVPVGLTGWAQINGRDELEIPV
KAALDGEYVKRQSFLFDCKCFFGTFISVLKSDGVVEGGTGEIHKHEQEARQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1N AAL26667.1 type 8 capsule synthesis gene Virulence SCCcap1 Protein 1e-36 50
SSP0070 YP_300160.1 capsular polysaccharide synthesis protein Not tested SCC15305cap Protein 2e-35 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
FSU_3254 YP_005822997.1 lipopolysaccharide synthesis sugar transferase VFG1369 Protein 1e-46 63
FSU_3254 YP_005822997.1 lipopolysaccharide synthesis sugar transferase VFG1309 Protein 1e-38 48