Gene Information

Name : EJP617_04600 (EJP617_04600)
Accession : YP_005817028.1
Strain : Erwinia sp. Ejp617
Genome accession: NC_017445
Putative virulence/resistance : Virulence
Product : Type VI secretion system family ATPase, ClpV1
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 507205 - 509820 bp
Length : 2616 bp
Strand : -
Note : -

DNA sequence :
ATGTCAGAAATCAGCCGCGCCGTACTGTTCGGCAAACTGGATACGCTGTTATTTACCTCTCTGGAGAGCGCCACCGCGTT
TTGTAAACTGCGCGGCAACCCCTATGTGGAGCTGGTGCACTGGCTGCATCAGCTGATGCAGCATCAGGGGGGCGATCTTC
AGCAACTTATCCGCCATTTTTCACTGGATGAAGAGGCGCTGACGCGGGATATCGTGGCGGCGCTCGACAGATTGCCACGC
GGAGCCAGCGCGGTCTCTGACCTGTCCGAACATATCGACAGCGCGGTGGAGCGCGCCTGGGTTTACGCTTCGCTGAAATT
CGGCGTACAGCAGATCCGTGGCGGCCACCTGCTGACTGGCCTGCTGAAAACCTTTAACCTTGGCAACCTGCTGAAAAGTA
TCTCGCCGCAGTTCAGCCGCGTCAGCGTTGACGTGCTGTTGGCGCAGTTTGATCAGGTATTTGGCGACAGCAAAGAGGCA
CTGGCCGCTAGCGCTGCGCCGCAGACCGCCAGCGGTGAAGTTCCGCTGCAGCAGGGTACGCTGGCGCAGTACGCGCAGGA
TCTGACGGCGCGCGCGCGCGATGGCAAGATCGATCCGGTGGCCGGGCGCGACCAGGAGATCCGCCAGATGGTGGATATTC
TGATGCGCCGCCGCCAGAACAACCCGCTACTCACCGGGGAAGCCGGGGTAGGCAAAACGGCGGTGGTGGAAGGGCTGGCG
CTGCGTATCGCCGCAGGCGACGTGCCTGAACCGTTGCAGCAGGTGCAGCTGTGGCTGCTGGATATCGGCATGTTGCAGGC
CGGAGCCGGGATGAAGGGTGAATTTGAGGCGCGGCTTCAGGCGTTGATTAATGAAGTGCAGTCCAGCCCGACGCCGATCG
TCCTGTTTATTGATGAGATCCACACTCTGGTCGGCGCGGGCGGTCAGCAGGGTACCGGCGATGCCGCCAACCTGCTGAAA
CCGGCGCTGGCACGCGGCCAGCTGCGCACCATCGGTGCCACCACTTGGGCGGAGTACAAAAAGTATATTGAAAAAGATCC
GGCGCTAACCCGCCGCTTCCAGACCGTGCAGGTGCACGAGCCGGACGAGGAGAAAGCGCTGCTGATGCTGCGCAGTACCG
TCAGCCCGCTGGAGCAGCACCACCGCATCCTGCTGCTGGATGAGGCGGTTGCGGCGGCGGTCAAGCTCTCGCATCGCTAT
ATTCCGGCGCGTCAGCTGCCGGATAAGGCGGTGGCGCTGCTGGACACCGCCTGCGCGCGCGTTGCCGTCAGCCAGAGCGC
CCAGCCGCCGCAGCTGGAAGACTGCCTGCATCGTATTCATGCGCTGGAAATTGAACGCGATATCGCCGGGCGCGAGGCAA
AAGTGGGCATCGGCGAGGCCGGGCGCGTGGCACAGCTGGAGCAGCAGCTGGCGGCGCTGGGCGAACAGCGCGACAGGCTT
AACGCACGCTGGCAGCAGGAGCGCGCGCTGGTGGACGACATCATCGCCCTGCGCGGGCAGCTGAGCGCAGAGACGGCGGA
AGACCAGGCGAGCCTGCATCAGCAGCTTACCGCACGCCAGCAGCAGCTGCGTGAACTTCAGGGCGAAGCCCCGCTGCTGT
TCGCGGCGGTGGATGCCAACGTGGTGGCGGCAGTGGTCGCCGACTGGACCGGTATTCCGCTGGGGCGCATGGTGAAAAAC
GAAATCGACGCGGTGCTCAAGCTGGCTGATACCCTTAATCAGCGGGTGATCGGCCAGCGCCACGGGCTTGACCTGATCGC
CAAACGGGTACGCACCTCACGCGCGCGCCTGGACGACCCGAACAAGCCGGTCGGGGTATTTATGCTGTGCGGGCCATCCG
GAGTGGGCAAAACTGAAACCGCGCTGGCGCTGGCGGAAACCCTGTACGGCGGCGAACAGAATATTATCACCATCAATATG
AGCGAGTTCCAGGAGGCGCATACCGTTTCCACGCTGAAAGGCGCCCCGCCGGGCTACGTCGGCTATGGCGAAGGCGGAGT
CCTGACCGAAGCGGTACGTCGCCGTCCGTACAGCGTGGTGCTGCTGGATGAAATTGAAAAGGCGCACCCGGACGTGCATG
AGATCTTCTTCCAGGTGTTTGATAAGGGCTGGATGGAGGACGGCGAAGGACGGCATATCGACTTCCGCAACACCATCATT
ATTCTCACCTCTAACGTCGGTACGCAGCTGATTAGCGCCATGTGTGCCGACCCGGAACTGATGCCGCAGCCAGAGGACCT
GGCCGGGGCGCTGCGCCCGCCGCTGCTGGAGGTTTTCCCCCCGGCGCTGCTCGGCCGCCTGCTGGTGGTACCTTATTATC
CGCTCAGTGATGAGGTGCTGGCCAATATCGTGCGTCTGCAATTACAGCGTATTCAGCGGCGGCTGAAGGAGAATCACGGT
ATCATCTCCGAAGTGGATGACAGCGTGATTAGCCAGATTGTTCAGCGCTGTACCGAAGTGGAGTCCGGCGGCCGTATGGT
CGACGCCATTCTTACCAATACCCTGTTGCCGCAAATGAGCCAGATGCTGCTGTCTGCCAGCGCGCGCGACGAACAATACC
GTCGCCTGCGCGTTACGTTACATCAGGGCGAATTCCAGTGTCAGTTTGAGGCGTAA

Protein sequence :
MSEISRAVLFGKLDTLLFTSLESATAFCKLRGNPYVELVHWLHQLMQHQGGDLQQLIRHFSLDEEALTRDIVAALDRLPR
GASAVSDLSEHIDSAVERAWVYASLKFGVQQIRGGHLLTGLLKTFNLGNLLKSISPQFSRVSVDVLLAQFDQVFGDSKEA
LAASAAPQTASGEVPLQQGTLAQYAQDLTARARDGKIDPVAGRDQEIRQMVDILMRRRQNNPLLTGEAGVGKTAVVEGLA
LRIAAGDVPEPLQQVQLWLLDIGMLQAGAGMKGEFEARLQALINEVQSSPTPIVLFIDEIHTLVGAGGQQGTGDAANLLK
PALARGQLRTIGATTWAEYKKYIEKDPALTRRFQTVQVHEPDEEKALLMLRSTVSPLEQHHRILLLDEAVAAAVKLSHRY
IPARQLPDKAVALLDTACARVAVSQSAQPPQLEDCLHRIHALEIERDIAGREAKVGIGEAGRVAQLEQQLAALGEQRDRL
NARWQQERALVDDIIALRGQLSAETAEDQASLHQQLTARQQQLRELQGEAPLLFAAVDANVVAAVVADWTGIPLGRMVKN
EIDAVLKLADTLNQRVIGQRHGLDLIAKRVRTSRARLDDPNKPVGVFMLCGPSGVGKTETALALAETLYGGEQNIITINM
SEFQEAHTVSTLKGAPPGYVGYGEGGVLTEAVRRRPYSVVLLDEIEKAHPDVHEIFFQVFDKGWMEDGEGRHIDFRNTII
ILTSNVGTQLISAMCADPELMPQPEDLAGALRPPLLEVFPPALLGRLLVVPYYPLSDEVLANIVRLQLQRIQRRLKENHG
IISEVDDSVISQIVQRCTEVESGGRMVDAILTNTLLPQMSQMLLSASARDEQYRRLRVTLHQGEFQCQFEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 0.0 55
aec27 YP_851418.1 ATPase Not tested PAI II APEC-O1 Protein 1e-123 42
aec27 AAQ96721.1 Aec27 Not tested AGI-1 Protein 1e-123 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EJP617_04600 YP_005817028.1 Type VI secretion system family ATPase, ClpV1 VFG2076 Protein 0.0 59
EJP617_04600 YP_005817028.1 Type VI secretion system family ATPase, ClpV1 VFG2084 Protein 7e-141 43