Gene Information

Name : sitD (EJP617_32290)
Accession : YP_005819797.1
Strain : Erwinia sp. Ejp617
Genome accession: NC_017445
Putative virulence/resistance : Virulence
Product : Iron transport protein, inner membrane component SitD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3489127 - 3489963 bp
Length : 837 bp
Strand : +
Note : -

DNA sequence : 
ATGAGCCTGACAGAACTGCTGCTTAGCCCGTTTCAGTTTGACTTTATGAATACGGCACTGGCCATATCGGTGATTGTCGC
TATCCCCTGCGCCCTGCTCTCCAGCTTCATGGTGATCAAAGGCTGGTCGCTGATGGGCGATGCCATGAGCCATGCGGTGT
TTCCCGGCGTGGTGCTGGCCTGGATACTCGGCATCCCTCTGGCTGTCGGCGCGTTTTGTGCCGGGCTGTTCTGCGCAATG
GCGACTGGCTTCGTGACGGAAAACAGCCGCATTAAACAGGATACCGTGATGGGCATTATCTTCTCCGGGATGTTCGCCGC
TGGTCTGATCCTCTATATCTCGGTAAAATCCGAGGTGCATCTCGACCACATCCTGTTCGGCGATATGTTAGGTATTTCCC
CCAGCGATATGCTGCAAAGCGCAGCCATTGCCGGCGTTATTGCTGTTATCATTGGCATTAAATGGCGCGATTTGGTGCTA
CATGCTTTTGATGCGCAGCAGGCGAAAGCATGCGGGCTGAACACAACGCTGCTGCACTATGGCCTGCTGAGCATGATCGC
ACTGACCATCGTCGCTACGCTGAAAGCGGTGGGGATCGTGTTGTCAATTGCGCTGCTCATTGCCCCCGGGGCCATTGCCA
TTCTGCTTATGCGCACTTTCTCATCGGTGATGATCTGTGCGTTGCTGTTGGCAATCGCGGTCTGCTTTAGCGGCACGTAC
CTGTCATTCTTCCTCGACAGTGCTCCCGGTCCCACCATCGTGGTGCTATTCGCTCTGCTGTTTGTCATGGCGTTTATTTA
TTCTCTGCGCCGCGAGCGCAAGATACTTTTGACCTGA

Protein sequence : 
MSLTELLLSPFQFDFMNTALAISVIVAIPCALLSSFMVIKGWSLMGDAMSHAVFPGVVLAWILGIPLAVGAFCAGLFCAM
ATGFVTENSRIKQDTVMGIIFSGMFAAGLILYISVKSEVHLDHILFGDMLGISPSDMLQSAAIAGVIAVIIGIKWRDLVL
HAFDAQQAKACGLNTTLLHYGLLSMIALTIVATLKAVGIVLSIALLIAPGAIAILLMRTFSSVMICALLLAIAVCFSGTY
LSFFLDSAPGPTIVVLFALLFVMAFIYSLRRERKILLT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-82 73
sitD NP_461785.1 permease Virulence SPI-1 Protein 1e-82 73
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 8e-83 73
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-82 73
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-82 73

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitD YP_005819797.1 Iron transport protein, inner membrane component SitD BAC0352 Protein 5e-83 73
sitD YP_005819797.1 Iron transport protein, inner membrane component SitD BAC0442 Protein 7e-57 51
sitD YP_005819797.1 Iron transport protein, inner membrane component SitD BAC0441 Protein 6e-36 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitD YP_005819797.1 Iron transport protein, inner membrane component SitD VFG0528 Protein 4e-83 73