Gene Information

Name : hofB (EJP617_03190)
Accession : YP_005816887.1
Strain : Erwinia sp. Ejp617
Genome accession: NC_017445
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 351230 - 352630 bp
Length : 1401 bp
Strand : +
Note : -

DNA sequence : 
ATGACACCGGCGACACAACGAGCGGTCGAAGCGATTTGTCTGGCTCATCAGGCGATTATCGTTGAGTTCAACGCACAGCG
GCTACATATTGCGGTCGCTGAGACCCCCAGCCATACGCTGATGGCCGAACTGCGTTTTGCCGCCCACTGCCCTATTGAAG
TTGAATGCTGGCCGCAAGCAAGACTGGAGCAGTTTCACCAAAGGAAGGAACTTCCGGCTCTGGCAGCAGCAGAGGGTGCG
CCGGAGTACAACGGCACAGCAGTAGAAATCATCAACGCTTTACTGGTGCAAGCGTTACAAAAACGTGCATCTGATATTCA
TATTGAGCCGCAGGAAAGTAGCCTGCGGCTGCGTTTACGTGTCGACGGCGTATTACAGCAATTGCCCCTGGCCGGAGTGG
AAAGCAGCACACCGCTGATCGCTCGTCTGAAAATTCTTGCCAGCCTGGATATCTCGGAACGTCGGGTGCCACAGGACGGG
CAGTTTTCACTGCTGCTGAACGGTAATACCGAATCATTCCGTCTCTCGACCCTGCCAACACGATTTGGTGAAAAGGCCGT
AGTGCGCCTGATGCAAAGCGATAGCCATGCCATTGCGCTGGAAAACCTCGGCATGCCCGGCTCGCTGTTGAAGCGCTACC
GCGAAGCACTGGCTCGTCCGCAGGGGATGATCCTGGTCACCGGCCCCACCGGCAGTGGAAAAACCTTTACGCTTTATAGC
GGCCTGAGCTGGTTGAATATCGCCACGCGTAACCTGTGTAGCGTGGAGGATCCGGTGGAAATCCCCATGGTGGGGGTCAA
TCAAACCCAGATCCACGCTAAGTCAGGGCTGGATTTTCACCGCGTGTTACGTGCTCTACTGCGCCAGGATCCCGACGTGA
TTATGATCGGCGAGATCCGTGATGCTGAAACCGCTGAGATCGCCATAAAAGCAGCGCAAACAGGTCACCTGGTACTTTCA
ACGTTGCATACCAACTCAACTACCGAAACGCTGGTGCGGCTTGGTCAGATGGGCGTGCCGGGATATTTGCTGGCATCGGC
TCTTAAACTGGTCATTGCGCAGCGACTGGTACGAAAGCTCTGTCCTCACTGCCGGCAACCTGCTACGGCAGTTTCCCATT
TTCCTCCCCATATCTGGCCGGGAACCGTGCAAAACTGGCTGGCGGTGGGCTGTGAACGTTGCTTCTCGGGTTTTTATGGC
CGTCTTCCTCTGTTTGAACTGCTGCCCATCTCCGCACGACTGCAAAACGCACTGGCAAAATCGGCCCAGCCGGAAGAACT
GGCTAAAATTGCACGTCAGCAGGGAATGAACACGCTGTTCGTTGAAGGACTGCATTGCGTTAATCGCGGAGAAACAACGC
TGGAGGAGCTAACGCGCGTAGCCGGAGGCAGCGATGGGTGA

Protein sequence : 
MTPATQRAVEAICLAHQAIIVEFNAQRLHIAVAETPSHTLMAELRFAAHCPIEVECWPQARLEQFHQRKELPALAAAEGA
PEYNGTAVEIINALLVQALQKRASDIHIEPQESSLRLRLRVDGVLQQLPLAGVESSTPLIARLKILASLDISERRVPQDG
QFSLLLNGNTESFRLSTLPTRFGEKAVVRLMQSDSHAIALENLGMPGSLLKRYREALARPQGMILVTGPTGSGKTFTLYS
GLSWLNIATRNLCSVEDPVEIPMVGVNQTQIHAKSGLDFHRVLRALLRQDPDVIMIGEIRDAETAEIAIKAAQTGHLVLS
TLHTNSTTETLVRLGQMGVPGYLLASALKLVIAQRLVRKLCPHCRQPATAVSHFPPHIWPGTVQNWLAVGCERCFSGFYG
RLPLFELLPISARLQNALAKSAQPEELAKIARQQGMNTLFVEGLHCVNRGETTLEELTRVAGGSDG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspE YP_854406.1 type II secretion protein GspE Not tested PAI I APEC-O1 Protein 2e-73 46
gspE CAE85233.1 GspE, hypothetical type II secretion protein Not tested PAI V 536 Protein 2e-73 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hofB YP_005816887.1 hypothetical protein VFG2426 Protein 4e-75 47
hofB YP_005816887.1 hypothetical protein VFG2048 Protein 4e-75 47
hofB YP_005816887.1 hypothetical protein VFG1876 Protein 6e-71 44
hofB YP_005816887.1 hypothetical protein VFG0182 Protein 9e-68 44