Gene Information

Name : EJP617_02020 (EJP617_02020)
Accession : YP_005816770.1
Strain : Erwinia sp. Ejp617
Genome accession: NC_017445
Putative virulence/resistance : Virulence
Product : lysine decarboxylase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 217846 - 220158 bp
Length : 2313 bp
Strand : -
Note : -

DNA sequence :
ATGTTGGACTTCAATCTGACATTTGCCGGTACAGTTTCCTGTCTGGCTCTTTTTGTTTCGGTGTCCCTGCTGCCCGGTTA
TCCTTATGTTGCTGCCAGACGCCGCGTGTGGATCAGGCAAAACTCTCTGGAGAATGTCATGAATATTATTGCCATCATGG
GCCCGCACCACGTCTTCTACAAAGACGAGCCTGTCCGTGAGCTGGATGTCGCATTAAAACGACAGGGGTTCCACACCGTT
TATCCGCAGGGTGCCGAGGATTTGCTGAAGCTTGTTGAGCACAATCCGCGCATCTGCGGCGTGGTGTTTGACTGGGACGA
GTACAGTCTTGATCTCTGTAGCGAGATCAACCAGCTGAATGAATATTTGCCGCTTTACGCGTTTATCAATACCGATTCGA
CGATGGATGTCGGCGTTAACGAGATGCGCATGGCGATCTGGTTCTTCGAGTATGCGCTCAATGCCGGTGAAGAGATTGCC
CAGCGCATTCGCCAATATACCGATGAATACATTGATACCATCACGCCGCCGCTGACCAAAGCGCTGTTTAACTACGTCAA
AGAGGGAAAGACAACTTTCTGTACGCCAGGGCATATGGCGGGTACGGCATTCCAGAAAAGCCCGGTGGGCAGCCTGTTCT
ATGATTTCTTTGGTGCCAATACGCTGAAGGCGGATATCTCGATTTCGGTTAGCGAATTAGGTTCGTTGCTCGACCACACC
GGCCCCCACCTTGAGGCGGAGGAGTATATAGCGCGCACCTTTGGCGCGGAACAGAGCTATATGGTCACCAATGGCACCTC
CACCGCCAACAAGATTGTCGGTATGTACGCGGCAGCAGCAGGCAGTACCGTGTTGATAGACCGCAACTGCCATAAATCCC
TGACCCATCTGCTGATGATGAGCGATATTATTCCCGTCTGGCTGAAGCCAACGCGCAATGCGCTGGGTATTCTTGGCGGC
ATCCCGAAGCGCGAATTTACCAAAGAGAGCATTGCGCTCAAAGTGGCACAAACGCCGCGCGCCAGCTGGCCGCTACATGC
GGTGATCACGAATTCGACCTATGACGGGCTGCTGTATAACACGCAATACATCAAAGAGACGCTGGAGGTACCGTCGATTC
ACTTCGACTCGGCATGGGTGCCTTATACTAACTTCCACCCGATCTATCGGGGATTGAGCGGTATGAGCGGCGAACGTACG
CCGGGTAAGGTGATTTACGAGACGCAGTCCACGCACAAATTGCTGGCCGCGTTTTCTCAGGCTTCGCTGATCCACATTAA
AGGCGACTACGATGAACAGACCTTTAATGAAGCCTATATGATGCATACCACCACTTCGCCGAACTACGCCATCGTCGCCT
CTATCGAAACGGCGGCGGCGATGCTGCGCGGTAATTCAGGCAAACGTCTGATTAACCGCTCGGTAGAGCGTGCGCTGCAT
TTCCGCCGCGAAGTACAGCGGCTGCGCGAAGAGTCAGACGGCTGGTTCTTTGATATCTGGCAGCCGGACGGGGTTGAGGA
GCCGGAATGTTGGGCGATCCAGCCCGGTGACGAGGAGTGGCACGGTTTCCGCGATGCCGATGCCGATCATATGTACCTCG
ACCCGATCAAGGTGACGATCCTGACGCCCGGTATGAGCGAGATGGGCGAGATGGCAGAAGAGGGCATTCCGGCGGCGCTG
GTGGCCAAGTTCCTTGACGAGCGCGGCGTGGTGGTGGAAAAAACCGGGCCGTACAACCTGCTGTTCCTGTTCAGCATCGG
CATTGATAAAACCAAAGCAATGAGCGTATTGCGCGGACTGACGGAGTTCAAACGCGCTTACGATCTCAATCTGCGGGTAA
AAAACATGCTGCCGGATCTGTACGCAGAGGATCCAGACTTCTACCGCAATATGCGTATTCAAACCCTGGCACAGGGCATT
CACAGCCTGATCCGCCAGCACGATTTGCCACGCCTGATGCTGCAAGCCTTCGCCATGCTGCCGGAAATGAAGTTAACGCC
GCACCAGATGTTTCAGCAGCAGGTAAAAGGCAATGTGGAAACGGTTGATATCAGCCAGCTGATTGGGCGCGTGTCGGCCA
ATATGATCCTGCCTTATCCGCCCGGCGTGCCGCTGGTGATGCCGGGGGAAATGATCACTGAGGAGAGTCGTCCGCTGCTC
GATTTCTTGCTGATGCTGTGCACCATCGGCAGACATTATCCCGGCTTTGAAACCGATATTCACGGTGCAAAACTGACCGA
AGAGGGGCAATATCTGGTGCGGGTGCTGAAGCACGATGGCGAAGTGCAGGCTGCTGAAAATGCGGTGGTTTAA

Protein sequence :
MLDFNLTFAGTVSCLALFVSVSLLPGYPYVAARRRVWIRQNSLENVMNIIAIMGPHHVFYKDEPVRELDVALKRQGFHTV
YPQGAEDLLKLVEHNPRICGVVFDWDEYSLDLCSEINQLNEYLPLYAFINTDSTMDVGVNEMRMAIWFFEYALNAGEEIA
QRIRQYTDEYIDTITPPLTKALFNYVKEGKTTFCTPGHMAGTAFQKSPVGSLFYDFFGANTLKADISISVSELGSLLDHT
GPHLEAEEYIARTFGAEQSYMVTNGTSTANKIVGMYAAAAGSTVLIDRNCHKSLTHLLMMSDIIPVWLKPTRNALGILGG
IPKREFTKESIALKVAQTPRASWPLHAVITNSTYDGLLYNTQYIKETLEVPSIHFDSAWVPYTNFHPIYRGLSGMSGERT
PGKVIYETQSTHKLLAAFSQASLIHIKGDYDEQTFNEAYMMHTTTSPNYAIVASIETAAAMLRGNSGKRLINRSVERALH
FRREVQRLREESDGWFFDIWQPDGVEEPECWAIQPGDEEWHGFRDADADHMYLDPIKVTILTPGMSEMGEMAEEGIPAAL
VAKFLDERGVVVEKTGPYNLLFLFSIGIDKTKAMSVLRGLTEFKRAYDLNLRVKNMLPDLYAEDPDFYRNMRIQTLAQGI
HSLIRQHDLPRLMLQAFAMLPEMKLTPHQMFQQQVKGNVETVDISQLIGRVSANMILPYPPGVPLVMPGEMITEESRPLL
DFLLMLCTIGRHYPGFETDIHGAKLTEEGQYLVRVLKHDGEVQAAENAVV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cadA NP_756988.1 lysine decarboxylase, inducible Not tested PAI II CFT073 Protein 0.0 71
unnamed CAD66195.1 putative cadaverin decarboxylase Virulence PAI III 536 Protein 0.0 62

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EJP617_02020 YP_005816770.1 lysine decarboxylase VFG1670 Protein 0.0 62