Gene Information

Name : spaP (EPYR_02146)
Accession : YP_005802897.1
Strain : Erwinia pyrifoliae DSM 12163
Genome accession: NC_017390
Putative virulence/resistance : Virulence
Product : surface presentation of antigens protein SpaP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2242880 - 2243569 bp
Length : 690 bp
Strand : -
Note : yscR: type III secretion apparatus protein,YscR/HrcR family. Similar to flagellar FliP protein. Possible N-term signal sequence

DNA sequence :
ATGATATGGATATCTACAATGCTGAATAATGACATTTCCTTAATTGGCGTACTTTCTTTTTTTACGTTGCTTCCATTCCT
TATTGCAGGTGGTACTTGTTTCATCAAATTTTCAATTGTATTAGTGATGATGCGCAATGCATTAGGAATCCAGCAAGTAC
CTTCTAACCTTACCCTCAATGGAATTGCACTTATTTTAAGCGCATTTGTAATGATGCCTGTATGTCAGCGTATTGCTGAT
GATGTTGAAAGCCGGCATATTGATTTTAATCAAAGTGGAGCTATTCCACAGTTGATGGATGATGGGTTGGGGAGCTATCG
TGAATATCTGGTGCATTATTCCGACCATGATTTGATTCATTTTTTTAATAAAGTTCAAAAGAAAAGAAATGATGACAATG
AAGTCGATATTACTGAACATGAATTGAGAAGATTACCATTAATGACTTTGATGCCTGCTTACGCACTAAGTGAAATTCAA
AGCGCATTCAAGATTGCTTTTTATATTTATATTCCCTTCGTTGTAATAGATATGGTTGTGTCCAGTATTTTACTGGCATT
AGGTATGATGATGATGAGTCCGGTGACCATCTCTATTCCAATAAAACTGATTCTTTTTGTTGCAATGGATGGTTGGAGCT
TATTGGCGAAAGGGCTTATCACACAATATGCTGACCTAATGACATCATGA

Protein sequence :
MIWISTMLNNDISLIGVLSFFTLLPFLIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGIALILSAFVMMPVCQRIAD
DVESRHIDFNQSGAIPQLMDDGLGSYREYLVHYSDHDLIHFFNKVQKKRNDDNEVDITEHELRRLPLMTLMPAYALSEIQ
SAFKIAFYIYIPFVVIDMVVSSILLALGMMMMSPVTISIPIKLILFVAMDGWSLLAKGLITQYADLMTS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ysaR AAS66846.1 YsaR Not tested SSR-1 Protein 2e-72 70
spaP NP_806493.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 1e-57 59
spaP YP_217809.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 5e-58 59
spaP NP_461811.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 5e-58 59
spaP NP_457284.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 1e-57 59
spaP NP_311752.1 surface presentation of antigens protein SpaP Not tested LIM Protein 1e-66 59
epaP AAZ31293.1 EpaP Virulence ETT2 Protein 2e-65 58
spaP AAS66865.1 SpaP Not tested SSR-2 Protein 6e-59 50
unnamed AAL06354.1 EscR Virulence LEE Protein 1e-41 42
escR AAC38369.1 EscR Virulence LEE Protein 2e-41 41
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 5e-42 41
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 5e-42 41
escR AAC31528.1 L0049 Virulence LEE Protein 3e-42 41
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 3e-42 41
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 3e-42 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
spaP YP_005802897.1 surface presentation of antigens protein SpaP VFG0551 Protein 2e-58 59
spaP YP_005802897.1 surface presentation of antigens protein SpaP VFG2455 Protein 2e-60 58
spaP YP_005802897.1 surface presentation of antigens protein SpaP VFG1773 Protein 4e-65 58
spaP YP_005802897.1 surface presentation of antigens protein SpaP VFG1012 Protein 1e-59 56
spaP YP_005802897.1 surface presentation of antigens protein SpaP VFG0394 Protein 2e-37 42
spaP YP_005802897.1 surface presentation of antigens protein SpaP VFG0044 Protein 2e-39 41
spaP YP_005802897.1 surface presentation of antigens protein SpaP VFG0715 Protein 1e-41 41
spaP YP_005802897.1 surface presentation of antigens protein SpaP VFG0827 Protein 2e-42 41