Gene Information

Name : intB (EPYR_01562)
Accession : YP_005802313.1
Strain : Erwinia pyrifoliae DSM 12163
Genome accession: NC_017390
Putative virulence/resistance : Unknown
Product : protein intB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1670328 - 1671545 bp
Length : 1218 bp
Strand : -
Note : DNA breaking-rejoining enzyme, catalytic core,Phage integrase family

DNA sequence : 
GTGGCGCTTACTGATATAAAAATAAGAAATACAAAGCCTTCCGGGAAAGCCGTTAAGCTCACTGACGGCTTCGGTATGTA
TCTGCTCATACACCCCAACGGCTCAAAATACTGGCGCATGCAGTACCGTTTTGGCGGTAAGCAAAAAACTCTGGCACTTG
GCGTGTATCCTGCCGTCTCTTTATCTGATGCAAGGCAGCGCCGTGACGAAGCAAAAAAGCTGCTGGCGAAAGGAACCGAC
CCTGTTGTGAAGAAGCAGGACGACAAACGGGAAAACAGCGGCACTTTTTCGTTTGAATCGGTCGCCAGACAATGGCATGC
GGGCAATAAAAAGTGGTCAGAAGAGTACAAAGGGAAAATTCTGCGCACGCTGGAAACCTATCTTTTTCCGGTAATCGGCA
ATCGCCATATCGCAGAACTGAAAACCCGCGACCTGCTGGTGCCGATAAAAGCGGTTGAGGATAAGGGTTTTAATGAAGTG
GCTATGCGGCTGCAACAGCGCACCACCGCCATTATGCGTTACGCCGTTCTACAGGGTATTCTTGATTATAATCCTGCTCA
GGAAATGTCAGGTGCGATTACCACAGGTAAACGCGCTCACCGTCCCGCCCTGCCCTTTGAACGATATCACGAGTTTTTAG
AACGCATTGACAGTTACCGTAAAAGATTACTTACTCGGCTGGCAGTGAAACTGACCCTGCTGACCTTTATTCGTTCCAGC
GAACTCCGTTTTGCACGATGGTCAGAAATTGATTTTAAAAAATCGCTCTGGACGATACCTGGTGAGCGCGAAGCACTGCC
GGGCATAAAAAACGCACATCGCGGAGCCAAAATGAAAACCCCGCACCTAGTTCCACTCAGCAGGCAGGCCATTGCCATTC
TGAGAGAAATACAGGAAATCAGTGGCGACCATAACTTCATCTTTATCGGCGACCACTATGCCGACAAACCCATGAGTGAA
AATACGGTCAACAAAGCACTACGCACTATGGGCTACGACACGCAGAAAGACGTCTGCGGTCACGGTTTTCGCACAATGGC
ATGCAGTTCTCTTATTGAGTCGGGTAAATGGTCTAAGGATGCCGTTGAACGCCAGATGAGCCATCAGGAACTCAATAATG
TTCGCGCAGCCTATACCCACCAGGCCGAACATCTGGATGAGCGCAGGCTTATGCTGCAATGGTGGGCTGATTTTCTGGAT
GCTAACCGGGAAGGTTGA

Protein sequence : 
MALTDIKIRNTKPSGKAVKLTDGFGMYLLIHPNGSKYWRMQYRFGGKQKTLALGVYPAVSLSDARQRRDEAKKLLAKGTD
PVVKKQDDKRENSGTFSFESVARQWHAGNKKWSEEYKGKILRTLETYLFPVIGNRHIAELKTRDLLVPIKAVEDKGFNEV
AMRLQQRTTAIMRYAVLQGILDYNPAQEMSGAITTGKRAHRPALPFERYHEFLERIDSYRKRLLTRLAVKLTLLTFIRSS
ELRFARWSEIDFKKSLWTIPGEREALPGIKNAHRGAKMKTPHLVPLSRQAIAILREIQEISGDHNFIFIGDHYADKPMSE
NTVNKALRTMGYDTQKDVCGHGFRTMACSSLIESGKWSKDAVERQMSHQELNNVRAAYTHQAEHLDERRLMLQWWADFLD
ANREG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 3e-125 70
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 2e-128 66
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 2e-128 66
int AAK16198.1 Int Not tested PAI-I AL862 Protein 8e-129 66
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 8e-129 66
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 2e-126 65
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 1e-128 65
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 2e-128 65
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 2e-126 65
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 7e-129 65
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 5e-128 65
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 2e-128 65
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 1e-128 65
int AAL51028.1 CP4-like integrase Not tested LEE Protein 1e-128 65
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 2e-128 65
int-phe AAL60261.1 Int-phe Not tested LEE Protein 1e-128 65
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 2e-128 65
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 6e-128 65
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 9e-128 65
int AAL51003.1 CP4-like integrase Not tested LEE Protein 4e-128 65
int AAK00456.1 Int Not tested SHI-1 Protein 2e-120 65
int CAC81896.1 integrase Not tested LEE II Protein 2e-120 65
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 1e-116 61
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 1e-116 61
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 7e-110 58
int CAB59974.1 integrase Not tested HPI Protein 2e-102 54
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 4e-103 54
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 4e-103 54
int CAA21384.1 - Not tested HPI Protein 2e-102 53
int YP_002346908.1 integrase Not tested HPI Protein 2e-102 53
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 2e-102 53
int CAA08754.1 integrase Not tested HPI Protein 2e-102 53
int2 NP_993013.1 integrase Not tested HPI Protein 2e-102 53
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 3e-72 52
unnamed AAD17660.1 unknown Not tested HPI Protein 8e-100 52
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 4e-84 52
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 1e-88 50
int AAD44730.1 Int Not tested SHI-2 Protein 6e-77 43
int CAC39282.1 integrase Not tested LPA Protein 1e-77 43
aec33 AAW51716.1 Int Not tested AGI-3 Protein 1e-77 43
int ACU09430.1 integrase Not tested LEE Protein 5e-76 42
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 7e-76 42
ECs4534 NP_312561.1 integrase Not tested LEE Protein 7e-76 42
int AAC31482.1 CP4-like integrase Not tested LEE Protein 5e-76 42
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 2e-75 42
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 2e-75 42
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 1e-75 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
intB YP_005802313.1 protein intB VFG1536 Protein 2e-125 70
intB YP_005802313.1 protein intB VFG0626 Protein 9e-129 66
intB YP_005802313.1 protein intB VFG1693 Protein 2e-128 65
intB YP_005802313.1 protein intB VFG0783 Protein 3e-76 42
intB YP_005802313.1 protein intB VFG0598 Protein 8e-76 42