Gene Information

Name : kpsC (EPYR_01030)
Accession : YP_005801781.1
Strain : Erwinia pyrifoliae DSM 12163
Genome accession: NC_017390
Putative virulence/resistance : Virulence
Product : capsule polysaccharide export protein kpsC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1120198 - 1122222 bp
Length : 2025 bp
Strand : +
Note : Capsule polysaccharide biosynthesis, TC 9.A.41.1.2 Capsule polysaccharide export protein kpsC

DNA sequence :
ATGATTGGCATTTATTCTTCCGGCATCTGGCGTATTCCTTATCTGGCCAACTTTTTGCGTGAGCGTTGCCACAAAGTTGC
GCTGCGCCATGCCCTACCCGCAGAGGTAGATGCAATCGCCGTATGGGGCTATCGTCCATCCGGTAAAAAGGAGGTTCGGG
CTGCCCAATCCGCCGGTAAGACCCTGATGCGACTTGAGGACGGTTTTATCCGTTCGCTGGGACTGGGTGTAGAAGGCGCG
TCGCCATTTTCCATGGTCGTTGATCGTCTTGGCATGTACTACGATGCAGGACGCCCCAGTACGCTTGAACGTTTGATTCA
GGACACGCCAGGTAGCAGCGTGCTGGTAGCGGAAGCGGAAGACGCCATGCGTACCATCGTTAACGAAGATCTTTCCAAAT
TCAATCACGCTCTGCCGTTTAAACGCACAACGCCGATGCCGTCTGACGTGGTGCTGGTGGTGGATCAAACCGCTGGCGAT
CTGTCAGTCAAGTGGGGCGGTGGCGGAGCGACCGATTTTACCCGCATGGTGAATGCAGCGCTGAGCGAAAATCCTTACGC
GACAATCTGGGTCAAGGTTCATCCTGATGTACTGAGTGGTTCTAAGCAGGGCTATTTGGGGGCGGTAGAGTTGGATGAAC
GAGTCCATCTGTTCACTGAAGATGTCAGCCCGCAGTCTTTGCTACGCGTGGTGACTAAAGTCTATGTTGTCACCTCGCAG
TTAGGTTTCGAGGCGTTGCTGGCGGGTAAACCGGTAGTGTGTTTTGGTCTGCCGTGGTATTCCGCCTGGGGGCTGACCGA
CGACCGCCATTCTGGAGCCGCCTGCCTGGCGGAACGACGGGGGCGCGCCTCACTGACCGCGCTGTTTACCGCCGCCTATT
TGCGGTATAGCCGTTATATTCATCCCGCAAGCGGGCAACCGGCGAGACTGACCGAGGTCCTTGAGTGGCTGGTGCGTGAG
CGCCGGCACGGCCTGCAACGTGTCGGGCATCTATGGGCGCCCGGGCTTCCGCTGTGGAAAGCGACGATGGTGAAGCCATT
TTTGCACACGCGTGATAATCAGTTGACCATGGCCAGGCGTTGCCGACCGGCAGAAGCCTGCGTGGTTTGGGGGATCAAAG
GAGAGCATCGCTGGGGCAGATTGGCACAACAGCGCGGTATTCCCGTCTGGCGCATGGAAAATGGCCTGCTGCGTTCCAGT
GGACACGGGGCAGCTCAGAAGCCGCCGCTGTCGCTGGTGCTTGATAAACAGGGCATTTATTACGATGCGCGTCGCCCGAG
CGATCTGGAACAGATGCTGAATAACAGTCAGCTGTCAGCGCAACAAGCGACAAGAGCGCAGCGGCTTCATCAGCGGCTGG
TGGAGCAGCGCACCGTTAAACAAGACGTTGACCATTTTCAACTGCCCGCCGCCGCCGCTAATCGCCTAGCGATACTGGTA
CTGGGCCAGGTGGAAGACGATATTTCGCTTGCCACCGGCGCGCTCGGGGTGCGTACCAATCATGATTTATTGCACCGCGT
GCGAGAAAACTATCCCCAGGCATTTATTTTTTATAAGCCACATCCGAACGCGCTGGCGGGGGATCTGAAGGGGGATATTT
CACCTGATGCACTGAGCCGCCTGGCGGATTTCGACGCGCGCGACGTCGATATTATCCCGTGCATCATGCAGGCAGATGAA
GTGCACACCATGACTTCACTGTGGGGATTTGAAGCGCTGCTGCACGGAAAACGTGTTCATTGCTACGGATTGCCTTTCTA
TGCAGGCTGGGGGCTAACGGACGATGAATTACCCTGCGCCCGCCGCACGCGCAAACTGACGCCAAACGATCTGATTTATC
AAGGACTGATCGCTTATCCCACCTATCTTGATCCACATACCTATACGGTGATTAGCCCTGAGGATGCGGTGGCAATACTA
GTCGAAGCGCCGCATGGCAGGCCGTGCACCATGAAAAAAATTCGCCGCAGGCTCAGGCACTATTTCCGCCAGCTAATGAT
GTTTATCAAGCTCAGGCTGTTCTGA

Protein sequence :
MIGIYSSGIWRIPYLANFLRERCHKVALRHALPAEVDAIAVWGYRPSGKKEVRAAQSAGKTLMRLEDGFIRSLGLGVEGA
SPFSMVVDRLGMYYDAGRPSTLERLIQDTPGSSVLVAEAEDAMRTIVNEDLSKFNHALPFKRTTPMPSDVVLVVDQTAGD
LSVKWGGGGATDFTRMVNAALSENPYATIWVKVHPDVLSGSKQGYLGAVELDERVHLFTEDVSPQSLLRVVTKVYVVTSQ
LGFEALLAGKPVVCFGLPWYSAWGLTDDRHSGAACLAERRGRASLTALFTAAYLRYSRYIHPASGQPARLTEVLEWLVRE
RRHGLQRVGHLWAPGLPLWKATMVKPFLHTRDNQLTMARRCRPAEACVVWGIKGEHRWGRLAQQRGIPVWRMENGLLRSS
GHGAAQKPPLSLVLDKQGIYYDARRPSDLEQMLNNSQLSAQQATRAQRLHQRLVEQRTVKQDVDHFQLPAAAANRLAILV
LGQVEDDISLATGALGVRTNHDLLHRVRENYPQAFIFYKPHPNALAGDLKGDISPDALSRLADFDARDVDIIPCIMQADE
VHTMTSLWGFEALLHGKRVHCYGLPFYAGWGLTDDELPCARRTRKLTPNDLIYQGLIAYPTYLDPHTYTVISPEDAVAIL
VEAPHGRPCTMKKIRRRLRHYFRQLMMFIKLRLF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsC YP_854335.1 capsule polysaccharide export protein KpsC Not tested PAI I APEC-O1 Protein 0.0 58
kpsC AAZ04470.1 capsule polysaccharide export protein Virulence PAI I APEC-O1 Protein 0.0 58
lipA NP_273145.1 capsule polysaccharide modification protein Not tested IHT-A Protein 3e-130 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
kpsC YP_005801781.1 capsule polysaccharide export protein kpsC VFG0259 Protein 1e-130 44
kpsC YP_005801781.1 capsule polysaccharide export protein kpsC VFG0692 Protein 9e-125 44
kpsC YP_005801781.1 capsule polysaccharide export protein kpsC VFG0704 Protein 4e-111 44