Gene Information

Name : hp2018_0524 (hp2018_0524)
Accession : YP_005791355.1
Strain : Helicobacter pylori 2018
Genome accession: NC_017381
Putative virulence/resistance : Virulence
Product : cag island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 523077 - 524069 bp
Length : 993 bp
Strand : -
Note : -

DNA sequence : 
ATGACAGCAGCGATTATTCCTATTGTTGTGGGATTTACTAATCCGCAAATGACCGCTATCATGACCCAATACAATCAAAG
CATCGCTGAAGCTGTAAGCGTGCCTATGAAAGCCGCTAACCAACAATACAACCAATTGTATCAAGGTTTTAACGATCAAA
GCATGGCTGTGGGGAACAATATCTTAAATATCAGCAAATTAACAGGGGAATTTAACGCGCAAGGCAACACGCAAAGCGCG
CAAATTGGTGCTGTCAATAGTCAGATTGCAAGCATTTTAGCGAGTAACACTACCCCTAAAAATCCTAGTGCTATTGAAGC
TTATGCGACGAATCAAATCGCTGTTCCTAGCGTGCCAACAACGGTTGAAATGATGAGCGGTATATTAGGCAATATTACAA
GCGCAGCACCAAAATACGCCCTAGCTCTACAAGAACAACTGCGTTCTCAAGCAAGCAACAGCTCAATGAATGATACAGCC
GATTCCCTTGATAGCTGTACCGCTTTAGGTGCACTTGTTGGCTCATCAAAAGTGTTTTTCAGTTGCATGCAAATTTCTAT
GACGCCCATGAGCGTTTCTATGCCCACTGTTTATGCCAAATACCAAGCGTTAGCCACTAATGCCCTAACTTCAGGCGTTA
ATCCTATGACCACTCCTGCATGCCCTATTGGGGACAAGGTTCTTGCCGTTTATTGCTATGCTGAAAAAGTAGCAGAAATT
TTGAGAGAATACTACATAGAATTTGTGAAAAACAATACCAATTTGTTGCAGAACGCTTCTCAAATGATACTCGGTCAATC
AGGATTAGCTACTAGCACCTATGACACTCAAGCGATTTCTAACATAAGCTCGCTATATAATTACAATATAGTAGCGAATA
AATCTTTTTTGAAATCGCATTTGACTTACCTTGATTACATCAAAGACAAGCTTAAGGGGCAAAAAGATAGCTACTTAACA
GAAAGGGTGCAAACTAAAATAATCGTGAAGTGA

Protein sequence : 
MTAAIIPIVVGFTNPQMTAIMTQYNQSIAEAVSVPMKAANQQYNQLYQGFNDQSMAVGNNILNISKLTGEFNAQGNTQSA
QIGAVNSQIASILASNTTPKNPSAIEAYATNQIAVPSVPTTVEMMSGILGNITSAAPKYALALQEQLRSQASNSSMNDTA
DSLDSCTALGALVGSSKVFFSCMQISMTPMSVSMPTVYAKYQALATNALTSGVNPMTTPACPIGDKVLAVYCYAEKVAEI
LREYYIEFVKNNTNLLQNASQMILGQSGLATSTYDTQAISNISSLYNYNIVANKSFLKSHLTYLDYIKDKLKGQKDSYLT
ERVQTKIIVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cagH AAC44699.1 CagH Virulence cag PAI Protein 2e-148 99
HP0541 BAD13793.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-147 99
cag20 AAR03875.1 Cag20 Virulence cag PAI Protein 1e-147 99
cag20 AAR03933.1 Cag20 Virulence cag PAI Protein 1e-147 99
cagH AGC69803.1 cag pathogenicity island protein H Virulence cag PAI Protein 1e-147 99
cagH YP_005779052.1 cag island protein Virulence cag PAI Protein 4e-147 99
cag20 AAR03903.1 Cag20 Virulence cag PAI Protein 6e-148 99
cagH YP_003728723.1 cag pathogenicity island protein H Virulence cag PAI Protein 5e-148 99
HP0541 BAD13929.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-148 99
cagH NP_223207.1 cag island protein Virulence cag PAI Protein 4e-148 99
HP0541 BAD13847.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-146 98
cagH YP_005774530.1 cag island protein Virulence cag PAI Protein 9e-146 98
HP0541 BAD13957.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-147 98
HP0541 NP_207337.1 cag pathogenicity island protein (cag20) Virulence cag PAI Protein 4e-146 98
cagH YP_005775741.1 cag island protein Virulence cag PAI Protein 3e-146 98
cagH YP_005777282.1 cag island protein Virulence cag PAI Protein 2e-146 98
HP0541 BAD14066.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-146 98
HP0541 BAD13874.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-146 98
cag20 AAR03964.1 Cag20 Virulence cag PAI Protein 2e-146 98
HP0541 BAD14012.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-145 97
HP0541 BAD14039.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-145 97
HP0541 BAD13902.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-145 97
HP0541 BAD13820.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-146 97
HP0541 BAD13984.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-146 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hp2018_0524 YP_005791355.1 cag island protein VFG0300 Protein 2e-146 98