Gene Information

Name : hp2018_0517 (hp2018_0517)
Accession : YP_005791348.1
Strain : Helicobacter pylori 2018
Genome accession: NC_017381
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 516276 - 516875 bp
Length : 600 bp
Strand : -
Note : -

DNA sequence : 
ATGAGTAATAACATGCGAAAACTCTTCTTAATGATTGCCAACTCAAAAGATAAGAAAGAAAAACTTATTAAGAGCTTGCA
AGAGAACGAACTTTTAAGCACTGATGAAAAAAAGAAAATCATGGATCAAGTAAAAACCATGCATGATTTTTTCAAACAGA
TGCATACAAACAAGGGAGCGTTAGATAAGGTTCTAAGAAATTACATGAAAGATTATCGCGCTGTTATCAAAAGCATTGGT
ATTGATAAATTTAAAAAGGTTTATCGTTTGCTTGAGAATGAGACTATGGAACTGTTGCATGCGATTACGGAGAATCCTAA
TTTCTTATTCTCCAAATTTGATCGATCAATTCTTGGAATATTTCTGCCTTTCTTCAGTAAGCCCATCATGTTTAAGATGA
GTATTAGAGAAATGGACTCGCAAATAGAATTGTATGATACTAAGCTCCCACTATTGAAATTGTTTGTGATGACAGATGAA
GAAGTGAATTTCTATGCTAATCTAAAAACCATTGAACAATATAACGACTATGTTAGGGATTTGCTGATGAAATTTGATCT
TGAAAAATACATGGAAGAAAAAGGAGTGCAAAATGCTTGA

Protein sequence : 
MSNNMRKLFLMIANSKDKKEKLIKSLQENELLSTDEKKKIMDQVKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIG
IDKFKKVYRLLENETMELLHAITENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYDTKLPLLKLFVMTDE
EVNFYANLKTIEQYNDYVRDLLMKFDLEKYMEEKGVQNA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0534 BAD13922.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-86 97
cagS YP_005779057.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-85 95
cag13 AAR03868.1 Cag13 Virulence cag PAI Protein 3e-85 95
HP0534 NP_207330.1 cag pathogenicity island protein (cag13) Virulence cag PAI Protein 6e-84 95
HP0534 BAD13840.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-85 95
cagS AAF80204.1 CagS Virulence cag PAI Protein 1e-85 95
HP0534 BAD13786.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-85 95
HP0534 BAD13895.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-85 95
cagS NP_223200.1 cag island protein Virulence cag PAI Protein 3e-85 95
HP0534 BAD14032.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-86 95
cagS YP_005774536.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-85 95
HP0534 BAD13950.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-85 94
HP0534 BAD14059.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-85 94
HP0534 BAD13813.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-84 94
cagS YP_005777277.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-84 94
cagS YP_003728731.1 cag pathogenicity island protein S Virulence cag PAI Protein 3e-85 94
HP0534 BAD14005.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-85 94
HP0534 BAD13977.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-84 93
cag13 AAR03926.1 Cag13 Virulence cag PAI Protein 4e-84 93
HP0534 BAD13867.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-84 93
cagS YP_005775736.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-84 93
cag13 AAR03957.1 Cag13 Virulence cag PAI Protein 1e-84 93
cag13 AAR03896.1 Cag13 Virulence cag PAI Protein 1e-84 93

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hp2018_0517 YP_005791348.1 cag pathogenicity island protein VFG0293 Protein 2e-84 95