Gene Information

Name : cag9 (hp2018_0513)
Accession : YP_005791344.1
Strain : Helicobacter pylori 2018
Genome accession: NC_017381
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 511809 - 513416 bp
Length : 1608 bp
Strand : -
Note : -

DNA sequence : 
ATGTTTAATCTTAAAAGGACTTTTTTAATAACGATCATGAGTTTTTTTCTCATTGTTCCTAATTGGTTGAAAGCTATTGA
TTTGCCCATTGTTTCAAATCTCAAAATTTACCAAACAGTTTATTGCATGCTGATACCGAGTTATGTTTTAACCAACAAAA
GTTTTGCAGATATTTTAACAGGTTACACATCTATTGGCCAATCAGGGAGCGGAAAGAGTTCAGGGCAAGGTGTGATCGAA
GCGCTTAGCACACCATTAGCCACAAGTTTAGCCGCTAGCAATCTGGTGAAATATTTGAACACTTTAGGTCCTTTATGGGG
ATCGGCGTGGGCAAGTGTTGCTACAGCTATACAAGGCTTTGCTCTAACGCCATCAAGTGGCTGTAATTTTGGTTGGAACG
CATTGATAAATAAAAACATAGACATATCCATGGATAGCATGCTAGACAATTTGAGCAACAAGATTCAGAATTTTACCAAA
GGCGGTGTTGAGGACAATGTGAAAGGCAATGTTCTTTTACAAATAATTAGCTCAATAACCGCTCAAGCTTCTACGAATAT
TACAGCTGATGGTTTAATTTGGCTGATTGGCAAAGAATTCACTGCAAATAAACTGCAAAACAACACTACAGCCATGCTTG
CTTTTGCCGCACTAGAATCTGTTGTCAAAGGAGCGGACGCTGCTGTTCTTCCTGCATATGGTGTAGTCAATCTGCCTGAT
ATTATCATAGGGCAAGGGTCATATCTTGATTTTGTTTCTTACCTAATTTATATTGTTTTTGGGATTTTTGTTTTCATTTC
TTTTATGAAATTGAGGGATATTTCAAATGGTATTCAGATTAACATAGGTTTTGAATACATGCGATTTATTGGGGGGACAT
TATTCAAAATGGCGATGGTCTCTTTTATCGCCTATGCAGGTTTTGGTTATCTTTATAAAATCTCTTATTCCATTTATTTT
GGTTTAGCAGGCACTTTTGGGCTGAATCAAGTTCTTTTTTGGGCTTTAGATCTAGTGCTGAATTACACTGTTAATTCAAT
TTTACCTGCGGTAAGAGCTGTTTTTTCTAATGTTGGTAACAACGCTCCTAGTTTGTTACAAGGCTTGCAAGTGGCAGGTA
TTTCTTTATTCGCCATTTTTATGCAAGTAACTATCATTATGAGAATAAGCACTGTGGTTGTGAAACCTTTGATAGCTGGG
GCTTTTAGCGGTATTGTGTTCCCTATTGCGGTATGTTTGATCGTGCTAGATTGGTTCAAAGATTCCATGAAAAACATATT
GATATGGTTTATTAATAATTTGTTTATCTTGGTTCTAGCTATTCCTATTTTACTCTTTGGTGTTTTGGCATTATTGGCAT
TCAATTTGACCATAACGCCCTCTGTTGCTATACAAAACATCAATCAAGGGGGACTGGGTATCGATTCAACTATTGCGAGT
TTGATCACTCTATTTATTTTAAAAGGTTTCATAGAGACGATTATTGAGAGTGTCAATGCGATCGTTAATACCATTTTCAG
CTCTGTCTCTATGGATGGCAGCAGGATGGATAGAGAAAGAGATGCCTTAATGGTAGGAAGAGTTGGTGGATCTATGTTTA
AAGGATAA

Protein sequence : 
MFNLKRTFLITIMSFFLIVPNWLKAIDLPIVSNLKIYQTVYCMLIPSYVLTNKSFADILTGYTSIGQSGSGKSSGQGVIE
ALSTPLATSLAASNLVKYLNTLGPLWGSAWASVATAIQGFALTPSSGCNFGWNALINKNIDISMDSMLDNLSNKIQNFTK
GGVEDNVKGNVLLQIISSITAQASTNITADGLIWLIGKEFTANKLQNNTTAMLAFAALESVVKGADAAVLPAYGVVNLPD
IIIGQGSYLDFVSYLIYIVFGIFVFISFMKLRDISNGIQINIGFEYMRFIGGTLFKMAMVSFIAYAGFGYLYKISYSIYF
GLAGTFGLNQVLFWALDLVLNYTVNSILPAVRAVFSNVGNNAPSLLQGLQVAGISLFAIFMQVTIIMRISTVVVKPLIAG
AFSGIVFPIAVCLIVLDWFKDSMKNILIWFINNLFILVLAIPILLFGVLALLAFNLTITPSVAIQNINQGGLGIDSTIAS
LITLFILKGFIETIIESVNAIVNTIFSSVSMDGSRMDRERDALMVGRVGGSMFKG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cag9 AAR03892.1 Cag9 Virulence cag PAI Protein 0.0 99
HP0529 BAD13890.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0529 BAD13835.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0529 BAD14028.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
orf16 NP_223196.1 cag island protein Virulence cag PAI Protein 0.0 99
HP0529 BAD13917.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cagW YP_005775732.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0529 BAD13862.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cagW YP_003728735.1 cag pathogenicity island protein W Virulence cag PAI Protein 0.0 99
HP0529 BAD14000.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
cagW YP_005779061.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
HP0529 BAD13808.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
cagW YP_005777273.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
HP0529 BAD14054.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
cagW YP_005774540.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
HP0529 BAD13972.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
cag9 AAR03922.1 Cag9 Virulence cag PAI Protein 0.0 98
HP0529 BAD13781.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
cagW AGC69796.1 cag pathogenicity island protein W Virulence cag PAI Protein 0.0 98
cag9 AAR03864.1 Cag9 Virulence cag PAI Protein 0.0 98
cag9 AAR03953.1 Cag9 Virulence cag PAI Protein 0.0 98
cag-W AAF80200.1 Cag-W Virulence cag PAI Protein 0.0 98
HP0529 BAD13945.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
HP0529 NP_207325.1 cag pathogenicity island protein (cag9) Virulence cag PAI Protein 0.0 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cag9 YP_005791344.1 cag pathogenicity island protein VFG0289 Protein 0.0 98