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Name : serS (hp2018_1416) Accession : YP_005792277.1 Strain : Helicobacter pylori 2018 Genome accession: NC_017381 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : - COG ID : - EC number : 6.1.1.11 Position : 1425148 - 1426395 bp Length : 1248 bp Strand : - Note : - DNA sequence : ATGATTGATAGAAAACTTTTATTGCAAGATTTTGACAAGGTGGCTCTTTCTTTAAAAAAGCGTAACGATGCGATGGACGA TGAGTTGGAGCGTTTGCGCGAAGCCATCACGCATTATAAAAAGCAACTCATTGAATTAGAAGGCTTGCAGGCCTTTCAAA ACAAGGTTTCTAAAGAGTTTGGTATCAAAATGGCTCAAAAAATGGATACAAGCGATCTCAAAAAAGAGCTAGAAAACAAT AAAATCAAACTGAATGAGCTTTCCAAAAGCGTGGGCGAAGCAGAACAAGAAATGGATTTAAAGCTTTCCATAATCCCTAA TCTGGTTGATGAAAAAACCCCTTTAGGCGCGAATGAAGAAGACAACATAGAGATTAAAAAAATCCTAACCCCAAGGGTTT TTAATTTCAAACCCAAAGAGCATTTTGAACTCGCCCAACAAAACGGCTGGATTGATTTTGAAAGCGGCGTGAAACTCGCC AAAAGCCGTTTTTCGGTCATTAGGGGTTTGGGGGCGAAAATTTATCGCGCGCTCATTTATTTAATGCTGGATTTTAATGA AAAAAACGGCTTTGAAATCATCTACACGCCGGCGTTAGTGAATGAAAAAATGCTTTTTGGGACCGGGCAATTACCCAAAT TCAAAGAAGATGTTTTCAAAATAGAAAATGAAAATTTGTATCTGATCCCTACCGCTGAAGTAACGCTCACCAATTTATAC AACGACACGATTATTAGCGTTGAAAACCTCCCCATTAAAATGACCGCGCACACGCCTTGTTTCAGGAGCGAAGCAGGGAG CGCGGGCAAGGATACAAGGGGGATGATAAGACAGCACCAGTTTGATAAAGTAGAACTAGTGGCTATCACGCACCCTAAAG AAAGCGATGCGATGCAAGAGTGCATGCTAGAGAGCGCGAGCGAAATTTTAAAGGCTTTGGAATTACCGCACCGGTTTGTG CAATTGTGTAGCGGGGATTTAGGCTTTAGCGCGAGCAACACGATAGATATTGAAGTGTGGCTACCTGGGCAAAATTGCTA CAGAGAGATCAGCTCCGTGTCTAACACGAGGGACTTTCAAGCTAGGCGCGCCAAAATCCGCTTCAAAGAAAATCAAAAAA ACCAATTAGTGCACACCTTAAACGGCTCTTCTTTAGCGGTAGGCAGGACGATGGTCGCTTTAATGGAAAACCACCAGCAA GCGGATGGGAGCATTCATATTCCTAAGGCGTTAGAAAAATACCTTTAA Protein sequence : MIDRKLLLQDFDKVALSLKKRNDAMDDELERLREAITHYKKQLIELEGLQAFQNKVSKEFGIKMAQKMDTSDLKKELENN KIKLNELSKSVGEAEQEMDLKLSIIPNLVDEKTPLGANEEDNIEIKKILTPRVFNFKPKEHFELAQQNGWIDFESGVKLA KSRFSVIRGLGAKIYRALIYLMLDFNEKNGFEIIYTPALVNEKMLFGTGQLPKFKEDVFKIENENLYLIPTAEVTLTNLY NDTIISVENLPIKMTAHTPCFRSEAGSAGKDTRGMIRQHQFDKVELVAITHPKESDAMQECMLESASEILKALELPHRFV QLCSGDLGFSASNTIDIEVWLPGQNCYREISSVSNTRDFQARRAKIRFKENQKNQLVHTLNGSSLAVGRTMVALMENHQQ ADGSIHIPKALEKYL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 7e-77 | 46 |
