Gene Information

Name : HPPN135_02560 (HPPN135_02560)
Accession : YP_005789729.1
Strain : Helicobacter pylori Puno135
Genome accession: NC_017379
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein 4
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 507150 - 507659 bp
Length : 510 bp
Strand : +
Note : -

DNA sequence : 
TTGTTTGAGAAATGGATGGGTCTGACTTTACTTCTTAATTCCTTAGCCTATCCATGCCAAAAAGTAACCATTAGTTTCAA
ACAATATGAGAATCTCATTCAGATCCACCAAAAAGGTTGCGACAATGAAGTGGTGTGCAGAACGCTCATCTCTATCGCTT
TATTGGAAAGTTCTTTAGGGTTGAACAACAAGCGCGAAATTTCTTCCAAAGACACTTCCTATTCCATGTTTCACATCACC
TTAAACACCGCTAAAAAATTCTACCCCACCTATTCTAAAACGCTCCTCAAATACAAATTGCTCAATGATGTGGATTTTGC
GATTTTGTTGGCTAAAAGAATTTTGAAAGAAAATTTTGATTATTACAAACAAAAATACCCTAATAAAAGCGTGTATCAAA
TAGTAGAAATGGCAGTAGGTGCTTACAATGGGGGAATGAAACACAACCCTAATGGCGCTTATATAAAGAGATTTCGTTGC
ATTTATTCTCAGGTGCGATATAACGAGTAG

Protein sequence : 
MFEKWMGLTLLLNSLAYPCQKVTISFKQYENLIQIHQKGCDNEVVCRTLISIALLESSLGLNNKREISSKDTSYSMFHIT
LNTAKKFYPTYSKTLLKYKLLNDVDFAILLAKRILKENFDYYKQKYPNKSVYQIVEMAVGAYNGGMKHNPNGAYIKRFRC
IYSQVRYNE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0523 BAD13884.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-64 95
HP0523 BAD13775.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-64 95
cag4 YP_005779067.1 cag island protein Virulence cag PAI Protein 5e-64 95
cag4 YP_005777267.1 cag island protein Virulence cag PAI Protein 2e-64 95
HP0523 BAD13802.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-64 94
cag4 YP_005774546.1 cag island protein Virulence cag PAI Protein 5e-64 94
cag4 AAR03855.1 Cag4 Virulence cag PAI Protein 2e-64 93
HP0523 BAD14048.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-63 93
HP0523 BAD13939.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-64 93
cag4 YP_005775726.1 cag island protein Virulence cag PAI Protein 1e-62 93
HP0523 BAD13856.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-63 93
HP0523 BAD13994.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-64 93
HP0523 BAD13829.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-63 93
cag4 AGC69794.1 cag pathogenicity island protein 4 Virulence cag PAI Protein 3e-63 92
cag4 AAR03886.1 Cag4 Virulence cag PAI Protein 9e-60 92
cag-gamma AAF80194.1 Cag-gamma Virulence cag PAI Protein 1e-62 92
cag4 AAR03946.1 Cag4 Virulence cag PAI Protein 7e-63 92
cag4 YP_003728743.1 cag pathogenicity island protein gamma Virulence cag PAI Protein 4e-63 92
cag4 AAR03915.1 Cag4 Virulence cag PAI Protein 4e-63 92
HP0523 BAD14022.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-64 91
HP0523 NP_207319.1 cag pathogenicity island protein (cag4) Virulence cag PAI Protein 9e-63 91
orf9 NP_223190.1 cag island protein Virulence cag PAI Protein 2e-57 90
HP0523 BAD13911.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-61 90
HP0523 BAD13966.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-45 88

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPPN135_02560 YP_005789729.1 cag pathogenicity island protein 4 VFG0283 Protein 3e-63 91