Gene Information

Name : HPPN135_02555 (HPPN135_02555)
Accession : YP_005789728.1
Strain : Helicobacter pylori Puno135
Genome accession: NC_017379
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein 3
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 505700 - 507145 bp
Length : 1446 bp
Strand : +
Note : -

DNA sequence :
ATGTTTAGAAAACTAGCAACCGCTGTATCGCTCATAGGCTTACTAACCTCTAACACTCTTTATGCTAAAGAAATAAGTGA
AGCCGATAAGGTCATTAAGGCCACTAAAGAAACTAAAGAGACCAAGAAAGAAGCTAAACGACTCAAAAAAGAAGCTAAAC
AGCGCCAACAGATCCCTGATCATAAGAAACCTCAATATGCCTCTGTTGATGACACAAAAACTCAAGCACTGTTTGATATA
TACGACACCTTGAATGTGAATGACAAAAGCTTTGGGGATTGGTTTGGTAATAGCGCTTTGAAAGACAAAACCTATCTCTA
CGCTATGGATCTATTGGATTACAACAACTATTTATCCATAGAAAACCCCATTATCAAAACAAGAGCGATGGGGACTTATG
CGGATCTCATCATCATCACAGGTTCGTTAGAACAAGTCAATGGGTATTACAACATTCTAAAAGCGCTCAACAAACGCAAC
GCTAAATTTGTCCTAAAAATCAATGAGAACATGCCTTATGCCCAAGCGACTTTTTTACGAGTGCCAAAAAGAAGCGATCC
TAATGCCCACACGCTTGATAAGGGAGCGTCAATTGATGAGAACAAGCTTTTTGAACAACAAAAACGCGCGTATTTCAACT
ATGCCAACGATGTGATCTGCAGACCCAATGATGAAGTGTGTTCGCCCCTAAGAGATGAAATGGTAGCTATGCCCACTAGC
GATAGCGCTACTCAAAAACCCAATATCATTGCTCCTTATAGCTTGTATAGACTAAAAGAGACAAATAACGCCAATGAGGC
TCAACCATCACCTTATGCCACTCAAACCGCTCCTGAAAACAGCAAAGAGAAGCTCATAGAAGAGCTAATCGCTAACTCCC
AACTCATAGCCAATGAAGAAGAGAGGGAAAAGAAACTCTTAGCAGAAAAAGAAAAACAAGAGTCTGAATTGGCTAAATAC
AAGCTCAAAGACTTAGAAAATCAAAAGAAACTAAAAGCTTTAGAAGCAGAGTTGAAAAAGAAAAATGCTAAGAAACCTAG
AGTAGTGGAAGTGCCTATTTCTCCTAGAACAAGTAATCCTGATGAAACAATGAGAGTTGTCAAAGAAAAAGAAAACTATA
ATGGATTGTTAGTGGATAAAGAAACCACGATCAAACGAAGCTATCAAGGGACTTTGATCAGTGAAAATTCTTACAGCAAA
AAAACACCCATCAACCCTAATGACTTGAGAAGCTTAGAAGAAGAAATTAAGAGCTACTATATTAAGTCTAATGGCTTGTG
TTATGCTAATGGCATTAACCTCTATGCAAAAATCAAAAACGACCCCTATAAAGAGGGAATGTTGTGTGGTTATGAGAGTA
TTCAAAAACTGCTCTCACCTCTAAAGGACAAGCTCAAGTACGACAAACAAAAGTTACAAAAAGCGTTACTGAAAGATTCA
AAGTAA

Protein sequence :
MFRKLATAVSLIGLLTSNTLYAKEISEADKVIKATKETKETKKEAKRLKKEAKQRQQIPDHKKPQYASVDDTKTQALFDI
YDTLNVNDKSFGDWFGNSALKDKTYLYAMDLLDYNNYLSIENPIIKTRAMGTYADLIIITGSLEQVNGYYNILKALNKRN
AKFVLKINENMPYAQATFLRVPKRSDPNAHTLDKGASIDENKLFEQQKRAYFNYANDVICRPNDEVCSPLRDEMVAMPTS
DSATQKPNIIAPYSLYRLKETNNANEAQPSPYATQTAPENSKEKLIEELIANSQLIANEEEREKKLLAEKEKQESELAKY
KLKDLENQKKLKALEAELKKKNAKKPRVVEVPISPRTSNPDETMRVVKEKENYNGLLVDKETTIKRSYQGTLISENSYSK
KTPINPNDLRSLEEEIKSYYIKSNGLCYANGINLYAKIKNDPYKEGMLCGYESIQKLLSPLKDKLKYDKQKLQKALLKDS
K

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0522 BAD14047.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-172 99
HP0522 BAD13801.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-172 98
cag3 YP_005774547.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-172 98
HP0522 BAD13910.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-171 98
HP0522 BAD13828.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-171 98
HP0522 BAD13774.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-171 98
cag3 YP_005775725.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-170 98
cag3 AAR03854.1 Cag3 Virulence cag PAI Protein 1e-171 98
HP0522 BAD13938.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-171 98
HP0522 BAD13855.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-170 98
cag3 YP_005779068.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-171 98
HP0522 BAD13883.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-172 98
cag3 YP_005777266.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-171 98
HP0521 BAD13993.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-169 98
HP0521 BAD13965.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-168 98
cag-delta AAF80193.1 Cag-delta Virulence cag PAI Protein 6e-171 97
HP0522 BAD14021.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-171 97
cag3 YP_003728744.1 cag pathogenicity island protein delta Virulence cag PAI Protein 5e-170 97
cag3 AAR03914.1 Cag3 Virulence cag PAI Protein 2e-169 97
cag3 AGC69793.1 cag pathogenicity island protein 3 Virulence cag PAI Protein 4e-170 97
HP0522 NP_207318.1 cag pathogenicity island protein (cag3) Virulence cag PAI Protein 3e-170 97
cag3 AAR03885.1 Cag3 Virulence cag PAI Protein 3e-168 97
cag3 AAR03945.1 Cag3 Virulence cag PAI Protein 1e-170 97
orf8 NP_223189.1 cag island protein Virulence cag PAI Protein 1e-166 94

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPPN135_02555 YP_005789728.1 cag pathogenicity island protein 3 VFG0282 Protein 1e-170 97