Gene Information

Name : HPPN120_02670 (HPPN120_02670)
Accession : YP_005788208.1
Strain : Helicobacter pylori Puno120
Genome accession: NC_017378
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein (cagC, cag25)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 534081 - 534428 bp
Length : 348 bp
Strand : -
Note : -

DNA sequence : 
ATGAAATTTCTTACAAGAATCACTGACAGCTACAAGAAAGTTGTAGTAACTTTAGGGCTAGTGATAACAACCAATCCTTT
AATGGCGGTCAGCTCTCCTGCAGCAGGCATTGCTGATACTAAAAATTTGGTTGTTCAGATCATTTCTGTTTTAGCGATCG
TAGGTGGTTGCGCTCTAGGGGTCAAAGGCATAGCAGATATTTGGAAAATCTCTGATGACATCAAAAGAGGTCAGGCGACT
GTTTTTGCTTATGCACAGCCCATAGCTATGTTAGCGGTGGCAGGCGGTATTATCTATTTGAGCACTAAGTTTGGCTTCAA
TATTGGCGAAAGTGGAGGAGCTAGCTAA

Protein sequence : 
MKFLTRITDSYKKVVVTLGLVITTNPLMAVSSPAAGIADTKNLVVQIISVLAIVGGCALGVKGIADIWKISDDIKRGQAT
VFAYAQPIAMLAVAGGIIYLSTKFGFNIGESGGAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0546 BAD14017.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-46 94
HP0546 BAD14071.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-46 94
HP0546 BAD13907.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-47 94
cagC YP_005774525.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-46 93
cagC YP_005779047.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-46 93
HP0546 BAD14044.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-45 93
HP0546 NP_207342.1 cag pathogenicity island protein (cag25) Virulence cag PAI Protein 3e-40 93
cagC NP_223212.1 cag island protein Virulence cag PAI Protein 2e-40 93
cagC AGC69805.1 cag pathogenicity island protein C Virulence cag PAI Protein 6e-46 93
cag25 AAR03908.1 Cag25 Virulence cag PAI Protein 2e-40 93
HP0546 BAD13798.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-46 93
cagC YP_003728718.1 cag pathogenicity island protein C Virulence cag PAI Protein 9e-36 92
HP0546 BAD13934.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-45 92
HP0546 BAD13852.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-40 92
cagC YP_005777287.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-45 92
HP0546 BAD13879.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-45 91
cag25 AAR03880.1 Cag25 Virulence cag PAI Protein 2e-45 91
cagC AAC44704.1 CagC Virulence cag PAI Protein 1e-39 91
HP0546 BAD13962.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-45 91
cag25 AAR03938.1 Cag25 Virulence cag PAI Protein 4e-40 91
cagC YP_005775746.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-45 91
cag25 AAR03969.1 Cag25 Virulence cag PAI Protein 3e-40 90
HP0546 BAD13825.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-44 89
HP0546 BAD13989.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-44 88

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPPN120_02670 YP_005788208.1 cag pathogenicity island protein (cagC, cag25) VFG0305 Protein 7e-41 93