|
Name : HPPN120_07250 (HPPN120_07250) Accession : YP_005789080.1 Strain : Helicobacter pylori Puno120 Genome accession: NC_017378 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : - COG ID : - EC number : 6.1.1.11 Position : 1457779 - 1459026 bp Length : 1248 bp Strand : - Note : COG0172 Seryl-tRNA synthetase DNA sequence : ATGATTGATAAAAAACTTTTATTGCAAGATTTTGAGATGGTGGCTCTTTCTTTAAAAAAGCGTAATAATGCGATGGATGA TGCATTGGAGCGCTTGCGCGAAGTCATCACGCATTATAAAAAGCAGCTCATTGAATTAGAAAGCTTGCAAGCCTTTCAAA ACAAGGTTTCTAAAGAATTTGGTATCAAAATGGCTCAAAAAGTGGATACAAGCGATCTCAAAAAAGAGCTAGAAAACAAT AAAATCAAACTGAATGAGCTTTCCAAAAGCGTGGGCGAATTGGAGCAACAAATAGATTTAAAGCTTTCAATAATCCCTAA TCTGGTGGATGAAAAAACCCCTTTAGGCGCAAGCGAAGAAGACAATATAGAGATTAAAAAAATCTTAACCCCTAGAAATT TCACTTTCAAACCCAAAGAACATTTTGAACTCGCTCAACAAAATGGCTGGATTGATTTTGAAAGCGGCGTGAAACTCGCT AAAAGCCGTTTTTCTGTCATTAGGGGTTTTGGGGCTAAAATTTATCGCGCGCTCATTCATTTAATGTTGGATTTTAATGA AAAAAATGGCTTTGAAATCATCTACACGCCGGCGTTGGTGAATGAAAAAATGCTTTTTGGGACCGGGCAATTACCCAAAT TCAAAGAAGATGTTTTCAAAATAGAAAATGAAAATTTGTATCTGATCCCTACCGCTGAAGTAACGCTCACTAATCTATAC AACGACACGATTGTTAGCGTTGAAAAACTCCCTATTAAAATGACCGCGCACACGCCTTGTTTTAGGAGTGAAGCAGGGAG TGCGGGCAAGGACACAAGAGGGATGATAAGACAGCACCAGTTTGATAAAGTAGAGCTAGTGGCTATCACGCACCCTAAAG AAAGCGATGCCATGCAAGAGCATATGCTAGAGAGCGCGAGCGAAATTTTAAAGGCTTTGGAATTACCGCACCGGTTTGTG CAATTGTGCAGCGCGGATTTAGGCTTTAGTGCAAGCAACACGATAGATATTGAAGTGTGGCTGCCTGGGCAAAATTGCTA CAGAGAAATCAGCTCGGTGTCTAACACGAGAGATTTTCAAGCCAGGCGCGCGAAAATCCGCTTCAAAGAAAATCAAAAAA ACCAGTTAGTGCACACCTTAAACGGCTCTTCTTTAGCGGTAGGCAGGACGATGGTCGCTTTAATGGAAAACCACCAACAA GCGGATGGGAGCATTCATATTCCTAAGGCATTAGAAAAATACCTTTAA Protein sequence : MIDKKLLLQDFEMVALSLKKRNNAMDDALERLREVITHYKKQLIELESLQAFQNKVSKEFGIKMAQKVDTSDLKKELENN KIKLNELSKSVGELEQQIDLKLSIIPNLVDEKTPLGASEEDNIEIKKILTPRNFTFKPKEHFELAQQNGWIDFESGVKLA KSRFSVIRGFGAKIYRALIHLMLDFNEKNGFEIIYTPALVNEKMLFGTGQLPKFKEDVFKIENENLYLIPTAEVTLTNLY NDTIVSVEKLPIKMTAHTPCFRSEAGSAGKDTRGMIRQHQFDKVELVAITHPKESDAMQEHMLESASEILKALELPHRFV QLCSADLGFSASNTIDIEVWLPGQNCYREISSVSNTRDFQARRAKIRFKENQKNQLVHTLNGSSLAVGRTMVALMENHQQ ADGSIHIPKALEKYL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 4e-78 | 45 |
