Gene Information

Name : HPSNT_02805 (HPSNT_02805)
Accession : YP_005786701.1
Strain : Helicobacter pylori Santal49
Genome accession: NC_017376
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein (cagD, cag24)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 570050 - 570673 bp
Length : 624 bp
Strand : -
Note : -

DNA sequence : 
TTGAACAACAATAATAGTCATAAAAAATTAAGAGACTTTTTTTTGAAAGTTCTCTTAAGTTTCGTTGTTTTCAGTTCGTA
TGGGTCAGCAAATGATGATAATTCAAGCAAAAAAGAAGCGCTAGAAAAAGAAAAAAACACTCCTAGCGGGCGTGTTTATA
CGAATTTAGATTTTGATAGTTTCAAGGCGACTATCAAAAATTTGAAAGACAAGAAAGTAACTTTCAAAGAAATCAATCCT
GATATTATCAAAGATGAAGTTTTTGACTTCGTGATTGTCAATAGAGTCCTTAAAAAAATAAAGGATTTGAAACATTACGA
TCCAATGATTGAAAAAATCTTTGATGAAAAGGGTAAAGAAATGGGATTGAATGTAGAATTACAGATCAATCCTGAAGTGA
AAGACTTTTTTACTTTCAAAAGCATCAGCACGACCAACAAACAACGCTGTTTTCTATCGTTGCGCGGAGAAACAAAAGAA
ATTTTATGCGATGATAAGCTGTATAATGTTTTATTGGCCGTATTCAATTCTTATGACCCTAATGATCTTTTGAAATATAT
TAGCACCGTAGAGTCTCTCAAAAAAATCTTTTATACAATTACATGTGAAGCGGTATATCTGTAA

Protein sequence : 
MNNNNSHKKLRDFFLKVLLSFVVFSSYGSANDDNSSKKEALEKEKNTPSGRVYTNLDFDSFKATIKNLKDKKVTFKEINP
DIIKDEVFDFVIVNRVLKKIKDLKHYDPMIEKIFDEKGKEMGLNVELQINPEVKDFFTFKSISTTNKQRCFLSLRGETKE
ILCDDKLYNVLLAVFNSYDPNDLLKYISTVESLKKIFYTITCEAVYL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cag24 AAR03879.1 Cag24 Virulence cag PAI Protein 2e-77 95
cag24 AAR03937.1 Cag24 Virulence cag PAI Protein 3e-77 95
HP0545 BAD14043.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-75 94
cag24 AAR03907.1 Cag24 Virulence cag PAI Protein 8e-77 94
HP0545 BAD13961.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-77 94
cag24 AAR03968.1 Cag24 Virulence cag PAI Protein 5e-76 94
HP0545 BAD13933.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-76 94
HP0545 BAD14016.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-77 94
cagD YP_003728719.1 cag pathogenicity island protein D Virulence cag PAI Protein 1e-76 94
cagD NP_223211.1 cag island protein Virulence cag PAI Protein 1e-74 94
cagD AAF80210.1 CagD Virulence cag PAI Protein 6e-74 94
HP0545 BAD13797.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-76 93
HP0545 BAD13851.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-76 93
HP0545 BAD13824.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-76 93
HP0545 BAD13988.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-76 93
HP0545 NP_207341.1 cag pathogenicity island protein (cag24) Virulence cag PAI Protein 5e-76 93
HP0545 BAD13906.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-77 93
cagD YP_005779048.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-76 93
cagD YP_005774526.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-76 93
cagD YP_005777286.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-75 92
cagD YP_005775745.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-76 92
HP0545 BAD13878.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-76 92
HP0545 BAD14070.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-76 92

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSNT_02805 YP_005786701.1 cag pathogenicity island protein (cagD, cag24) VFG0304 Protein 2e-76 93