Gene Information

Name : HPSNT_02775 (HPSNT_02775)
Accession : YP_005786695.1
Strain : Helicobacter pylori Santal49
Genome accession: NC_017376
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein (cag18)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 562803 - 563516 bp
Length : 714 bp
Strand : -
Note : -

DNA sequence : 
ATGAAAACACTCGTGAAAAATACCATATCTTCTTTTTTGCTCTTGTCTGTTTTGATGGCAGAAGATATAACAAGCGGCTT
AAAGCAACTGGATAGTACCTACCAAGAGACCAACCAACAAGTGCTCAAAAACTTAGATGAAATTTTTTCAACCACTAGCC
CTAGCGCTAATGATACAACGGGTGAAGAAGATGCTCTAAACATCAAAAAAGCGGCCATTGCTTTGAGAGGAGATTTAGCG
TTATTGAAAGCCAATTTTGAAGCGAATGAGTTATTTTTCATCTCAGAAGATGTGATTTTCAAGACTTATATGTCTAGCCC
TGAACTTTTATTGACCTATATGAAAATCAATCCCTTAGACCAAAACACTGCTGAGCAACAATGCGGAATATCCGATAAAG
TTTTAGTTCTTTATTGTGAAGGGAAACTGAAAATCGAGCAAGAAAAACAAAATATAAGAGAGCGTTTAGAAACTTCTCTA
AAGGCGTATCAGAGCAACATTGGAGGTACAACTTCCTTAATCACTGCTTCACAGACGCTTGTAGAAAGCCTAAAGAATAA
AAATTTCATCAAAGGAATCAGAAAGCTTATGTTAGCTCACAACAAGGTCTTTTTAAATTATTTAGAGAAGTTGGACGCAT
TAGAAAGATCCCTAGAACAAAGTAAGCGGCAATACCTACAAGAAAGGCAATCAAGCAAGATCATTGTTAAATGA

Protein sequence : 
MKTLVKNTISSFLLLSVLMAEDITSGLKQLDSTYQETNQQVLKNLDEIFSTTSPSANDTTGEEDALNIKKAAIALRGDLA
LLKANFEANELFFISEDVIFKTYMSSPELLLTYMKINPLDQNTAEQQCGISDKVLVLYCEGKLKIEQEKQNIRERLETSL
KAYQSNIGGTTSLITASQTLVESLKNKNFIKGIRKLMLAHNKVFLNYLEKLDALERSLEQSKRQYLQERQSSKIIVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0539 BAD13982.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-102 98
cag18 AAR03873.1 Cag18 Virulence cag PAI Protein 2e-102 98
HP0539 NP_207335.1 cag pathogenicity island protein (cag18) Virulence cag PAI Protein 9e-103 98
cag18 AAR03962.1 Cag18 Virulence cag PAI Protein 1e-102 98
cagL AGC69801.1 cag pathogenicity island protein L Virulence cag PAI Protein 6e-103 98
cagL AAC44697.1 CagL Virulence cag PAI Protein 2e-102 98
HP0539 BAD14010.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-101 97
HP0539 BAD13818.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-101 97
cagL YP_003728725.1 cag pathogenicity island protein L Virulence cag PAI Protein 9e-103 97
cag18 AAR03931.1 Cag18 Virulence cag PAI Protein 2e-101 97
cagL YP_005774532.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-101 97
cagL YP_005777280.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-101 97
HP0539 BAD14037.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-102 97
HP0539 BAD14064.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-100 96
HP0539 BAD13955.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-101 96
cagL YP_005775739.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-101 96
HP0539 BAD13791.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-101 96
cagL NP_223205.1 cag island protein Virulence cag PAI Protein 5e-101 96
HP0539 BAD13872.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-101 96
cag18 AAR03901.1 Cag18 Virulence cag PAI Protein 8e-101 96
HP0539 BAD13845.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-101 96
cagL YP_005779054.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-101 96
HP0539 BAD13927.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-100 95
HP0539 BAD13900.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-100 95

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSNT_02775 YP_005786695.1 cag pathogenicity island protein (cag18) VFG0298 Protein 4e-103 98