Gene Information

Name : HPSNT_02770 (HPSNT_02770)
Accession : YP_005786694.1
Strain : Helicobacter pylori Santal49
Genome accession: NC_017376
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein (cagN, cag17)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 561801 - 562721 bp
Length : 921 bp
Strand : +
Note : -

DNA sequence : 
TTGAAAAGTATCTTCAAAAAACTAGGTTCTGTCGCTCTTTATTCTTTAGTTATTTATGGGGGCTTAAACGCTATCAATAC
AGCATTATTGCCGAGTGAATACAAAGAATTAGTGGCTTTGGGCTTTAAAAAAATCAAAACACTCCATCAAAGACATGACG
ACGAAGAAGTTACAAAAGAGGAAAAAGAATTCGCCACTAACGCTTTGAGAGAAAAATTACGAAATGATAGGGCGAGAGCA
GAGCAAATTCAAAAGAATATTGAAGCGTTTGAAAAAAAGAACAACTCTTCTGTTCAAAAAAAAGCGGCTAAGCACAAAGG
ATTACAAGAATTAAACGAAATTAACGCTAACCCTTTGAATGACAACCCTAATAGCAATTCTTCCGCTGAAACCAAATCTA
ATAAAGATGATAACTTTGATGAGATGATCAATAAGGTGAATGAAGCTTTTGTAAAACCTGCTGCTCCGCTTGTGCCTGAT
GAGTGGAGAACACCTGAAATTGAAATCGTTATCAATGAGTGTATTATTTCAAGCAACGATTACGATGGGTTAAGAAAGTG
TTTGATCAAAGGCATCAAGGATCAAAAAATTCTTGCCCCCTTATTAGAAAAAATTCAAGAAATAGAGACAGAAAATAACA
AGTTTTCTAGACAACACTTGAGTGGTTTAAAACTCGCTCTTAACAACAGCAACAATAGAACCTTTCTTATAGCTTCGTGC
GCTATTTGTGAGAAGAGAAAAAAAGAAATGGAGCAAGAAAATAACTACCAAGATACTACAAATGCAAGTGAATTTGGAGC
TACTGATACAAAAGAAAACGAAGCCAAAGATGCAGCGTTTTCAAACAATCGTTCTAAATCTGAACTGCCCAATAGCGTCA
TTAATCAAATAGAACAAAGCATCGCTCATGGAAAAAAATAG

Protein sequence : 
MKSIFKKLGSVALYSLVIYGGLNAINTALLPSEYKELVALGFKKIKTLHQRHDDEEVTKEEKEFATNALREKLRNDRARA
EQIQKNIEAFEKKNNSSVQKKAAKHKGLQELNEINANPLNDNPNSNSSAETKSNKDDNFDEMINKVNEAFVKPAAPLVPD
EWRTPEIEIVINECIISSNDYDGLRKCLIKGIKDQKILAPLLEKIQEIETENNKFSRQHLSGLKLALNNSNNRTFLIASC
AICEKRKKEMEQENNYQDTTNASEFGATDTKENEAKDAAFSNNRSKSELPNSVINQIEQSIAHGKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0538 NP_207334.1 cag pathogenicity island protein (cag17) Virulence cag PAI Protein 1e-120 99
cag17 AAR03872.1 Cag17 Virulence cag PAI Protein 1e-119 98
cagN YP_005775738.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-118 97
cagN AAF80207.2 CagN Virulence cag PAI Protein 2e-118 97
HP0538 BAD13926.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-124 97
HP0538 ABC25004.1 cag pathogenicity island protein N Virulence cag PAI Protein 3e-115 97
HP0538 BAD13981.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-115 97
cagN YP_005774533.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-118 97
HP0538 BAD13871.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-118 97
cag17 AAR03961.1 Cag17 Virulence cag PAI Protein 4e-116 97
cagN YP_003728726.1 cag pathogenicity island protein N Virulence cag PAI Protein 5e-118 97
cag17 AAR03930.1 Cag17 Virulence cag PAI Protein 6e-119 97
HP0538 BAD13954.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-113 96
cagN NP_223204.1 cag island protein Virulence cag PAI Protein 2e-118 96
HP0538 BAD13844.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-114 96
HP0538 BAD13790.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-112 96
cagN YP_005779055.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-111 96
cagN YP_005777279.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-112 96
HP0538 BAD14036.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-117 96
HP0538 BAD13817.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-112 96
HP0538 BAD14063.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-113 96
HP0538 BAD13899.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-112 95
HP0538 BAD14009.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-112 95
cag17 AAR03900.1 Cag17 Virulence cag PAI Protein 9e-114 94

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSNT_02770 YP_005786694.1 cag pathogenicity island protein (cagN, cag17) VFG0297 Protein 5e-121 99