Gene Information

Name : HPSNT_02690 (HPSNT_02690)
Accession : YP_005786678.1
Strain : Helicobacter pylori Santal49
Genome accession: NC_017376
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein (cag3)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 539723 - 541168 bp
Length : 1446 bp
Strand : +
Note : -

DNA sequence : 
ATGTTTAGAAAACTAGCAACCGCTGTATCGCTCATAGGCTTACTAACCTCTAACACTCTTTATGCTAAAGAAATAAGTGA
AGCCGATAAGGTCATTAAGGCCACTAAAGAAACTAAAGAGACCAAGAAAGAAGCTAAACGACTCAAAAAAGAAGCTAGAC
AGCGCCAACAGATCCCTGATCATAAGAAACCTCAATATGCCTCTGTTGATGACACAAAAACTCAAGCACTTTTTGATATA
TACGACACCTTGAACGTGAATGATAAAAGCTTTGGGGATTGGTTTGGTAATAGCGCTTTGAAAGACAAAACCTATCTCTA
CGCTATGGATCTATTGGATTACAACAACTATTTATCCATAGAAAACCCCATTATCAAAACAAGAGCGATGGGGACTTATG
CGGATCTCATCATCATCACAGGTTCGTTAGAACAAGTCAATGGGTATTACAACATTCTAAAAGCGCTCAACAAACGAAAC
GCTAAGTTTGTGTTAAAAATCAATGAGAACATGCCTTATGCCCAAGCGACTTTTTTGAGAGTGCCAAAAAGAAGCGATCC
CAATGCCCACACGCTTGATAAGGGAGCGTCAATTGATGAGAATAAGCTTTTTGAACAACAAAAAAAAATGTATTTCAACT
ACGCCAACGATGTGATCTGCAGACCCAATGATGAAGTGTGTTCGCCCCTAAGAGATGAGATGGTCGCTATGCCCACTAGC
GATAGCGTTACTCAAAAACCCAATATCATTGCTCCTTATAGCCTGTATAGACTAAAAGAGACAAATAACGCCAATGAGGT
CCAACCATCACCTTATGCCACTCAAACCGCTCCTGAAAACAGCAAAGAGAAGCTCATAGAAGAGCTAATCGCTAACTCCC
AACTCATAGCCAATGAAGAAGAGATGGAAAAGAAACTCTTGGCAGAAAAAGAAAAACAAGAGGCTGAATTGGCTAAATAC
AAGCTCAAAGACTTAGAAAATCAAAAGAAACTAAAAGCTTTAGAAGCAGAGTTGAAAAAGAAAAATGCTAAGAAACCTAG
AGTAGTGGAAGTGCCTATTTCTCCTAAAACAAGTAATTCTTTTGAAACAATGAGAGTTATCAAAGAAAAAGAAAACTATA
ATGGATTATTAGTGGATAAAGAAACCACGATCAAACGAAGTTATGAGGGGACTTTGATTAGCGAAAATTCTTACAGCAAA
AAATCGCCTATCAACCCTAATGACTTGAAAAGCTTAGAGGAAGAAATCAAAAGCTACTACATCAAGTCTAACGGCTTGTG
TTACACTAATGGCATCAGCCTTTATGTGAAAATCAAAAACGACCCCTATAAAGAGGGAATGCTGTGCGGTTATGAGAGCG
TTCAAACTTTACTTTTGCCATTAAAGGACAAGCTCAAATACGACAAGCAAAAGTTACAAAAAGCGTTACTGAAAGATTCA
AAGTAA

Protein sequence : 
MFRKLATAVSLIGLLTSNTLYAKEISEADKVIKATKETKETKKEAKRLKKEARQRQQIPDHKKPQYASVDDTKTQALFDI
YDTLNVNDKSFGDWFGNSALKDKTYLYAMDLLDYNNYLSIENPIIKTRAMGTYADLIIITGSLEQVNGYYNILKALNKRN
AKFVLKINENMPYAQATFLRVPKRSDPNAHTLDKGASIDENKLFEQQKKMYFNYANDVICRPNDEVCSPLRDEMVAMPTS
DSVTQKPNIIAPYSLYRLKETNNANEVQPSPYATQTAPENSKEKLIEELIANSQLIANEEEMEKKLLAEKEKQEAELAKY
KLKDLENQKKLKALEAELKKKNAKKPRVVEVPISPKTSNSFETMRVIKEKENYNGLLVDKETTIKRSYEGTLISENSYSK
KSPINPNDLKSLEEEIKSYYIKSNGLCYTNGISLYVKIKNDPYKEGMLCGYESVQTLLLPLKDKLKYDKQKLQKALLKDS
K

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cag3 AAR03854.1 Cag3 Virulence cag PAI Protein 3e-163 99
HP0522 BAD14021.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-163 98
HP0522 BAD13774.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-161 97
HP0522 BAD13910.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-160 97
cag3 AAR03914.1 Cag3 Virulence cag PAI Protein 7e-162 97
HP0522 BAD13828.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-160 97
cag3 YP_005779068.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-161 97
cag3 AGC69793.1 cag pathogenicity island protein 3 Virulence cag PAI Protein 6e-162 97
cag3 YP_003728744.1 cag pathogenicity island protein delta Virulence cag PAI Protein 9e-162 97
HP0522 BAD13855.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-162 97
cag3 YP_005775725.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-162 97
HP0522 BAD14047.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-161 97
HP0522 NP_207318.1 cag pathogenicity island protein (cag3) Virulence cag PAI Protein 1e-162 97
HP0522 BAD13938.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-161 97
cag-delta AAF80193.1 Cag-delta Virulence cag PAI Protein 3e-161 97
cag3 AAR03885.1 Cag3 Virulence cag PAI Protein 5e-159 97
cag3 AAR03945.1 Cag3 Virulence cag PAI Protein 3e-161 97
HP0521 BAD13993.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-159 97
HP0521 BAD13965.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-159 97
cag3 YP_005774547.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-160 96
HP0522 BAD13883.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-160 96
HP0522 BAD13801.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-160 96
cag3 YP_005777266.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-160 96
orf8 NP_223189.1 cag island protein Virulence cag PAI Protein 2e-158 94

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSNT_02690 YP_005786678.1 cag pathogenicity island protein (cag3) VFG0282 Protein 6e-163 97