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Name : HPSNT_01940 (HPSNT_01940) Accession : YP_005786540.1 Strain : Helicobacter pylori Santal49 Genome accession: NC_017376 Putative virulence/resistance : Unknown Product : transketolase Function : - COG functional category : - COG ID : - EC number : 2.2.1.1 Position : 396023 - 397948 bp Length : 1926 bp Strand : - Note : COG0021 Transketolase DNA sequence : ATGCGATTGAGTAACGCTGACTTAGAACGATTAAAAAGCATGGCCAATGCGCTTCGCTTTTTGTGCGCAGACATGATAGA TAAGGCTAATAGCGGGCATCCGGGCGTGTGCTTGGGGTTAGCCGATGCGATGGTGGTTTTAAGCTTGCATTTAAACCTTA ACCCCACTAACCCTAAATGGCTCAACAGAGACAGGTTGGTTTTTAGCGGAGGGCATGCGAGCGCGTTAGCGTATAGTTTG TTGCATTTGTGGGGCTTTGATTTGAGCCTAGAAGATTTAAAGCGTTTCAGGCAATTACACTCTAAAACCCCAGGACACCC CGAATTGCACCACACCGAAGGCATTGAGATTACAACAGGCCCTTTGGGGCAAGGTTTTGCTAACGCTGTGGGCTTTAGCA TGGCGAGTCAATACGCTCAAAACCTCTTAGATAAACAAGCCATTTCTCATAAAGTCTATTGCTTGTGTGGGGATGGGGAT TTGCAAGAAGGCATTAGTTATGAGAGCGCTTCTTTAGCCGGGCACCTTCGCCTTGATAACCTCATTGTGATTTATGACAG CAACCAGATCAGCATTGAAGGCGCTATCAATATCAGTTTTAGCGAACAGGTTAAAACGCGTTTTTTAGCGCAAAATTGGG AAGTGCTAGAATGCGATGGGCATGACTATCAAGCGATTCATAACGCTTTAGAAGAAGCCAAAAAATCCACCAAACCCACG CTTTTAATCGCTCATACGATTATTGGTAAGGGGGCTATTGGCTTAGAGGGGAGTGAAAAAACGCATGGCTCGCCTTTAAA CAAAGAAGTGTTAAAACAATCCAAAGAAAACGCTCAAATCAATCCTGATGAAAGCTTTATTATTAGCCCAAAAAACAAAA TGCATTTTGAAGAAGTGAAAGTTAGGGGCGTTAGTTTAGAAGCCTTATGGGAAAAATCCTTAAGCCCTAAAGCAAAAGAA AAAATCCATGCGTTAAAGGATTTTGATTTTAGCGCCATCAATTACCCCACCTTTAAAAAAGGCGAATCTTTAGCCACGAG AGTGAGTAACGGCATGATTTTAAACGCTATCGCTAAAGAATGCGAGGGCTTTTTGGGGGGGAGCGCGGATTTAGCTCCGT CTAACAACACGCAATTAAAACACTCTGGCGATTTCCCTTTAGGGCAAAACTTGCATTTTGGGATCAGAGAGCATGCCATG GGGGCTATCACTAACGCTTTAGCGGCGTATGGTTTGTTTGTGCCTTTTTGCGCGACCTTTTTTGTGTTTAGCGATTACTT GATGCCCAGCATTCGTTTGAGCGCTTTAATGAAACTGAAAGCCCTTTTTATCTTCACGCATGACAGCATTGGCGTGGGTG AAGACGGGGCCACGCACCAGCCTATAGAGCAGTTGAGTCATTTGCGCGCTTTGCCCAATTTCTATGCTTTTAGGCCTAGC GATGCTTTTGAAAATGCCGCTTGCATGCAAGTAGCGTTAAGTTTGAACGCTCCTAGCGGGCTTATTTTATCGCGCCAAAA TTTACCCGTGCTTGATGAGGTTTCTAAAGAGCAGGTTTTAAAAGGCGCGTATGTTAAACACCACTCTAAAGATCCCCTTA TCACGCTCGTTGCGAGCGGGAGCGAAGTCTCTTTGGCTTTAGAGAGCGCTAAAATTTTAGAGCGAGAAAATATCCCCACT CAAGTGGTGAGTGCACCGTGCTTTGATTTATTGATAGAGCAAGATGAAAGCTATCTTAAAGAACTTTTTAAAGGTAAAGT TTTAGCGATTGAAGCGAGCCGCGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTGGCATGGATTCTTTTGGAAGCT CAGCAAAGGGCGATAAACTCTTTGAAAAATTCGGCTTTAGCGTTGAAAACATTACCACTCAAGCTAAAAGGTTGCTCAAC GCATGA Protein sequence : MRLSNADLERLKSMANALRFLCADMIDKANSGHPGVCLGLADAMVVLSLHLNLNPTNPKWLNRDRLVFSGGHASALAYSL LHLWGFDLSLEDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQNLLDKQAISHKVYCLCGDGD LQEGISYESASLAGHLRLDNLIVIYDSNQISIEGAINISFSEQVKTRFLAQNWEVLECDGHDYQAIHNALEEAKKSTKPT LLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLKQSKENAQINPDESFIISPKNKMHFEEVKVRGVSLEALWEKSLSPKAKE KIHALKDFDFSAINYPTFKKGESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTQLKHSGDFPLGQNLHFGIREHAM GAITNALAAYGLFVPFCATFFVFSDYLMPSIRLSALMKLKALFIFTHDSIGVGEDGATHQPIEQLSHLRALPNFYAFRPS DAFENAACMQVALSLNAPSGLILSRQNLPVLDEVSKEQVLKGAYVKHHSKDPLITLVASGSEVSLALESAKILERENIPT QVVSAPCFDLLIEQDESYLKELFKGKVLAIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGFSVENITTQAKRLLN A |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tktA | AAO17218.1 | TktA | Not tested | tcd island | Protein | 3e-97 | 42 |
| APECO1_2641 | YP_859417.1 | transketolase | Not tested | Not named | Protein | 1e-87 | 42 |
