|
Name : HPSNT_07850 (HPSNT_07850) Accession : YP_005787668.1 Strain : Helicobacter pylori Santal49 Genome accession: NC_017376 Putative virulence/resistance : Unknown Product : outer membrane protein Function : - COG functional category : - COG ID : - EC number : - Position : 1587618 - 1588433 bp Length : 816 bp Strand : + Note : COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen DNA sequence : ATGAATGCATTCAAGCGTATTATTAGTGTAGGGGTAATTGCTTTAGGTTTGTTTAACCTTTTAGACGCCAAACACCACAA AGAAAAAAAAGAAAACCACAAAATCACTCGTGAGCTTAAAGTGGGCGCTAACCCTGTGCCGCATGCGCAAATCTTGCAAT CAGTCGTGGACGATTTGAAAGAGAAAGGGATCAAATTGGTGATCGTGTCTTTTACCGATTATGTGTTGCCTAATTTAGCG CTCAATGACGGCTCTTTAGACGCGAATTACTTCCAGCACCGCCCTTATTTGGATCGGTTTAATTTGGACAGAAAAATGCA CCTTGTTGGTTTGGCCAATATCCATGTGGAGCCTTTAAGATTTTATTCTCAAAAAATCACAGACATTAAAAACCTTAAAA AAGGATCAGTGATTGCTGTACCAAATGATCCGGCCAATCAAGGCAGGGCGTTGATTTTACTGCATAAGCAAGGGATTATC GCTCTCAAAGACCCAAGCAATCTATACGCTACGGAGTTTGATATTGTCAAAAATCCTTACAACATCAAAATCAAGCCTTT AGAAGCCGCGCTATTGCCTAAAGTTTTAGGGGATGTGGATGGGGCCATCATAACAGGGAATTACGCCTTGCAAGCAAAAC TCACCGGAGCTTTATTTTCAGAAGACAAGGACTCGCCTTATGCTAATCTAATAGCCGCTCGTGAGGATAATGCACAAGAT GAAGCCATAAAAGTGCTGATTGAAGCCTTACAAAGTGAAAAGACCAGGAAATTTATTTTGGATACCTATAAGGGGGCGAT TATCCCGGCTTTTTAA Protein sequence : MNAFKRIISVGVIALGLFNLLDAKHHKEKKENHKITRELKVGANPVPHAQILQSVVDDLKEKGIKLVIVSFTDYVLPNLA LNDGSLDANYFQHRPYLDRFNLDRKMHLVGLANIHVEPLRFYSQKITDIKNLKKGSVIAVPNDPANQGRALILLHKQGII ALKDPSNLYATEFDIVKNPYNIKIKPLEAALLPKVLGDVDGAIITGNYALQAKLTGALFSEDKDSPYANLIAAREDNAQD EAIKVLIEALQSEKTRKFILDTYKGAIIPAF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SAAV_0786 | YP_003281709.1 | ABC transporter substrate-binding protein | Not tested | SaPIAv | Protein | 2e-34 | 41 |
