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Name : HPSNT_07335 (HPSNT_07335) Accession : YP_005787569.1 Strain : Helicobacter pylori Santal49 Genome accession: NC_017376 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : - COG ID : - EC number : 6.1.1.11 Position : 1480726 - 1481973 bp Length : 1248 bp Strand : - Note : COG0172 Seryl-tRNA synthetase DNA sequence : ATGATTGATAAAAAACTTTTATTGCAAGATTTTGATAAGGTGGCTCTTTCTTTAAAAAAGCGTAACCATGCGATGGATGA TGAGTTGGAGCGTTTGCGCGAAGTCATCATGCATTATAAAAAGCAACTCATTGAATTAGAAGGCTTGCAAGCCTTTCAAA ACAAGGTTTCTAAAGAATTTGGGATTAAAATGGCTCAAAAAGCGGATACAAGCGATCTCAAAAAAGAGCTAGAAAACAAT AAAATCAAACTGAATGATCTTTCCAAAAGCGTGGGCGGATTGGAGCAACAAATAGATTTAAAGCTTTCAATAATCCCCAA TCTGGTGGATGAAAAAACCCCTTTAGGCGCAAGCGAAGAAGACAATATAGAGATTAAAAAAATCTTAACCCCAAGGAATT TCACTTTCAAACCCAAAGAGCATTTTGAGCTCGCTCAAAAAAATGGCTGGATTGATTTTGAAAGCGGCGTGAAACTCGCT AAAAGCCGTTTTTCGGTCATCAGGGGTTTTGGGGCTAAAATTTATCGCGCGCTTATTCATTTAATGTTGGATTTTAACGA AAAAAATGGCTTTGAAATCATCTACACGCCGGCGTTAGTGAATGAAAAAATGCTTTTTGGGACTGGGCAATTACCCAAAT TCAAAGAAGACGTTTTCAAAATAGAAAATGAAAATCTGTATCTGATCCCCACCGCTGAAGTAACGCTCACTAATCTATAC AACGACACGATCATTAGCGTTGAAAATCTCCCTATTAAAATGACCGCGCACACGCCTTGTTTTAGGAGCGAAGCAGGGAG CGCAGGCAAGGACACAAGGGGGATGATAAGACAGCACCAGTTTGATAAAGTGGAGCTAGTGGCTATCACGCACCCTAAAG AAAGCGATGCGATGCAAGAGCGCATGCTAGAGAGCGCGAGCGAAATTTTAAAGGCTTTGGAATTACCGCACCGGTTCGTG CAATTGTGCAGCGCGGATTTAGGCTTTAGCGCGAGCAACACGATAGATATTGAAGTGTGGCTGCCCGGGCAAAATTGCTA CAGAGAAATCAGCTCGGTGTCTAACACGAGGGATTTTCAAGCCAGGCGAGCCAAAATCCGCTTCAAAGAAAATCAAAAAA ACCAATTAGCGCACACCTTAAACGGATCTTCTTTGGCGGTAGGCAGGACGATGGTCGCTTTAATGGAAAACCACCAGCAA GCGGATGGGAGCATTCATATTCCTAAGGCGTTAGAAAAATACCTTTAA Protein sequence : MIDKKLLLQDFDKVALSLKKRNHAMDDELERLREVIMHYKKQLIELEGLQAFQNKVSKEFGIKMAQKADTSDLKKELENN KIKLNDLSKSVGGLEQQIDLKLSIIPNLVDEKTPLGASEEDNIEIKKILTPRNFTFKPKEHFELAQKNGWIDFESGVKLA KSRFSVIRGFGAKIYRALIHLMLDFNEKNGFEIIYTPALVNEKMLFGTGQLPKFKEDVFKIENENLYLIPTAEVTLTNLY NDTIISVENLPIKMTAHTPCFRSEAGSAGKDTRGMIRQHQFDKVELVAITHPKESDAMQERMLESASEILKALELPHRFV QLCSADLGFSASNTIDIEVWLPGQNCYREISSVSNTRDFQARRAKIRFKENQKNQLAHTLNGSSLAVGRTMVALMENHQQ ADGSIHIPKALEKYL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 9e-77 | 45 |
