Gene Information

Name : fliI (HPSNT_06995)
Accession : YP_005787505.1
Strain : Helicobacter pylori Santal49
Genome accession: NC_017376
Putative virulence/resistance : Virulence
Product : flagellum-specific ATP synthase
Function : -
COG functional category : -
COG ID : -
EC number : 3.6.3.14
Position : 1418016 - 1419320 bp
Length : 1305 bp
Strand : -
Note : COG1157 Flagellar biosynthesis/type III secretory pathway ATPase

DNA sequence : 
ATGCCCCTAAAATCCTTAAAAAACCGCTTGAATCAGCATTTTGAACTATCGCCTCGCTATGGGATCGTGAAAAAAATCAT
GCCTAATATCGTCTATGCGGATGGTTTTAACCCCTCTGTGGGCGATGTGGTGAAGATTGAAAAAAGCGATGGCACTGAAT
GCGTGGGAATGGTGGTGGTGGCAGAAAAAGAGCAGTTTGGTTTCACGCCCTTTAACTTTATAGAGGGGGCTAGGGCTGGC
GATAAGGTGCTGTTTTTAAAAGAGGGGTTGAATTTCCCTGTGGGCCGTAATCTTTTAGGGAGGGTGCTTAACCCTTTAGG
GCAAGTCATTGACAATAAGGGGGCTCTAGATTATGAGCGGTTAGCGCCTGTGATTACAACGCCTATAGCCCCTTTAAAAA
GAGGCTTGATTGATGAGGTTTTTAGCGTGGGGGTGAAGAGCATTGATGGGCTTTTGACTTGCGGTAAGGGGCAAAAACTT
GGCATTTTTGCCGGCTCTGGGGTGGGTAAATCCACGCTAATGGGCATGATCACTAGGGGTTGCTTAGCGCCTATTAAAGT
GATCGCTTTGATTGGGGAAAGGGGCAGAGAAATCCCTGAATTTATAGAGAAAAACCTAAAAGGGGATTTAAGCTCTTGCG
TGTTGGTGGTCGCTACGAGCGATGATAGCCCTTTAATGCGCAAATACGGGGCTTTTTGCGCGATGAGCGTGGCGGAGTAT
TTTAAAAACCAAGGGCTAGATGTGTTATTCATCATGGATTCAGTGACTCGTTTCGCTATGGCTCAAAGAGAGATCGGTTT
AGCTTTAGGCGAACCGCCCACTTCCAAAGGCTACCCCCCATCCGCACTTTCCTTATTGCCTCAATTAATGGAGAGGGCGG
GTAAGGAAGAAAATAAGGGGAGCATTACGGCTTTTTTTAGCGTGCTAGTAGAGGGCGATGATTTGAGCGATCCCATAGCC
GATCAGGCCAGGAGTATTTTAGATGGGCATATTGTTTTAAGCAGGGAATTAACCGATTATGGGATCTACCCGCCCATCAA
TATTTTAAACTCCGCATCAAGGGTGGCTAAAGACATCATCAGCGAGTCTCAAAACCTTTGCACGAGAAAATTCCGCCGTT
TGTATGCGTTATTGAAAGAAAATGAAATGCTCATTCGCATCGGATCTTATCAAATGGGGAACGATAAAGAACTTGATGAA
GCGATTAAGAAAAAGGCTTTAATGGAGCAATTTTTAGCGCAAGATGAAAACGCTTTACAGCCTTTTGAAACAAGCTTTCA
GCAATTAGAAGAAATCTTAAGATAA

Protein sequence : 
MPLKSLKNRLNQHFELSPRYGIVKKIMPNIVYADGFNPSVGDVVKIEKSDGTECVGMVVVAEKEQFGFTPFNFIEGARAG
DKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGALDYERLAPVITTPIAPLKRGLIDEVFSVGVKSIDGLLTCGKGQKL
GIFAGSGVGKSTLMGMITRGCLAPIKVIALIGERGREIPEFIEKNLKGDLSSCVLVVATSDDSPLMRKYGAFCAMSVAEY
FKNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGSITAFFSVLVEGDDLSDPIA
DQARSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIISESQNLCTRKFRRLYALLKENEMLIRIGSYQMGNDKELDE
AIKKKALMEQFLAQDENALQPFETSFQQLEEILR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscN AAO18044.1 LscN Virulence TTSS locus Protein 2e-72 49
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 4e-78 46
ECs4568 NP_312595.1 EscN Virulence LEE Protein 6e-78 46
escN CAC81862.1 EscN protein Virulence LEE II Protein 1e-76 46
escN AAC38383.1 EscN Virulence LEE Protein 7e-78 46
escN YP_003236088.1 translocator EscN Virulence LEE Protein 2e-77 46
escN AAC31513.1 L0034 Virulence LEE Protein 4e-78 46
escN NP_290268.1 hypothetical protein Virulence LEE Protein 6e-78 46
unnamed AAL06369.1 EscN Virulence LEE Protein 2e-76 45
escN AAK26715.1 EscN Virulence LEE Protein 3e-76 45
escN AAL57542.1 EscN Virulence LEE Protein 3e-76 45
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 2e-76 45
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 7e-54 45
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 7e-54 45
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 6e-82 44
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 7e-81 44
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 1e-79 44
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 4e-81 44
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 4e-81 44
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-79 44
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-81 44
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 1e-52 44
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 1e-52 44
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-79 43
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-79 43
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 2e-69 43
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 2e-69 43
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 3e-62 43
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 8e-63 43
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-63 43
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 6e-63 43
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 3e-62 43
ysaN AAS66842.1 YsaN Not tested SSR-1 Protein 3e-58 42
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 3e-72 41
escN CAI43874.1 EscN protein Virulence LEE Protein 1e-76 41
escN YP_003223475.1 translocator EscN Virulence LEE Protein 2e-76 41
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 3e-58 41
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 2e-58 41
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 5e-59 41
ECs3730 NP_311757.1 ATP synthase SpaL Not tested LIM Protein 9e-53 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliI YP_005787505.1 flagellum-specific ATP synthase VFG0390 Protein 2e-78 52
fliI YP_005787505.1 flagellum-specific ATP synthase VFG0048 Protein 3e-78 50
fliI YP_005787505.1 flagellum-specific ATP synthase VFG0192 Protein 2e-76 50
fliI YP_005787505.1 flagellum-specific ATP synthase VFG2331 Protein 2e-71 49
fliI YP_005787505.1 flagellum-specific ATP synthase VFG2144 Protein 1e-77 47
fliI YP_005787505.1 flagellum-specific ATP synthase VFG0730 Protein 4e-78 46
fliI YP_005787505.1 flagellum-specific ATP synthase VFG0812 Protein 2e-78 46
fliI YP_005787505.1 flagellum-specific ATP synthase VFG1254 Protein 5e-77 45
fliI YP_005787505.1 flagellum-specific ATP synthase VFG0515 Protein 3e-63 43
fliI YP_005787505.1 flagellum-specific ATP synthase VFG1778 Protein 2e-55 42